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Agent skill

Bulktrajblend Trajectory Interpolation

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.

No licenceAuto-check passedResearch & Science

Install Bulktrajblend Trajectory Interpolation

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bulktrajblend-trajectory-interpolation -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bulktrajblend-trajectory-interpolation --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bulk-trajblend-interpolation .claude/skills/bulktrajblend-trajectory-interpolation && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bulktrajblend-trajectory-interpolation
GitHub stars
3.1k
Used in
1 other repo
Token cost
~1.1k tokens
SKILL.md length
407 words
Files
2
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.

  • Works in 10 steps: Prepare libraries and inputs → Configure BulkTrajBlend → Set beta-VAE expectations → …
  • Tasks that involve Bioinformatics
  • SKILL.md covers Overview, Instructions, Examples and References
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

Bulktrajblend Trajectory Interpolation is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.

Its SKILL.md is about 1.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 1 other file (for example `reference.md`).

It sits in Research & Science, covering Bioinformatics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Tasks that involve Bioinformatics

Example prompts

  • “/bulktrajblend-trajectory-interpolation”

Workflow steps

10 steps, taken from the first numbered list in SKILL.md.

  1. Prepare libraries and inputs
  2. Configure BulkTrajBlend
  3. Set beta-VAE expectations
  4. Train or load the beta-VAE
  5. Generate synthetic cells
  6. Configure and train the GNN
  7. Visualise community structure
  8. Interpolate missing states
  9. Analyse trajectories
  10. Troubleshooting tips

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bulktrajblend Trajectory Interpolation loads about 1.1k tokens when it runs. Until then it costs about 55 tokens; SKILL.md has 407 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~55
When it runs · the whole SKILL.md, loaded when a task matches
~1.1k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 407 words (~1,142 tokens).

“Invoke this skill when users need to bridge gaps in single-cell developmental trajectories using matched bulk RNA-seq. It follows t_bulktrajblend.ipynb, showcasing how BulkTrajBlend deconvolves PDAC bulk samples, identifies overlapping communities with a GNN, and interpolates "interrupted" cell states.”

— opening of SKILL.md by FreedomIntelligence
name
bulktrajblend-trajectory-interpolation
title
BulkTrajBlend trajectory interpolation

Read the full SKILL.md on GitHub

Files

SKILL.md and 1 other file in skills/bulk-trajblend-interpolation of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • reference.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.

Compare with similar skills

Bulktrajblend Trajectory Interpolation next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bulktrajblend Trajectory Interpolation compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bulktrajblend Trajectory Interpolation this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~1.1kAutomated safety check: PassNone
Alphagenome Single Variant Analysisgoogle-deepmind/science-skills3.2k2 repos~3kAutomated safety check: NotesApache-2.0
13C Metabolic Flux AnalysisK-Dense-AI/scientific-agent-skills48k1 repos~3.2kAutomated safety check: PassMIT
Clinvar Databasegoogle-deepmind/science-skills3.2k2 repos~3.9kAutomated safety check: NotesApache-2.0
Metabolic Study Planneraiming-lab/AutoResearchClaw15k—~1.9kAutomated safety check: PassMIT
Dbsnp Databasegoogle-deepmind/science-skills3.2k2 repos~3.4kAutomated safety check: NotesApache-2.0

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Categories

Questions about Bulktrajblend Trajectory Interpolation

What does Bulktrajblend Trajectory Interpolation do?

Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states. Bulktrajblend Trajectory Interpolation is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.

When should I use Bulktrajblend Trajectory Interpolation?

Bulktrajblend Trajectory Interpolation fits situations like: tasks that involve Bioinformatics.

How do I install Bulktrajblend Trajectory Interpolation in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bulktrajblend-trajectory-interpolation -a claude-code`. Or copy the skill folder (skills/bulk-trajblend-interpolation in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bulktrajblend-trajectory-interpolation in your project. Claude Code loads it when a task matches its description.

How do I install Bulktrajblend Trajectory Interpolation in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bulktrajblend-trajectory-interpolation -a codex`. Or copy the skill folder (skills/bulk-trajblend-interpolation in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bulktrajblend-trajectory-interpolation in your project. Codex loads it when a task matches its description.

Can I use Bulktrajblend Trajectory Interpolation in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bulktrajblend-trajectory-interpolation -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bulktrajblend-trajectory-interpolation, .gemini/skills/bulktrajblend-trajectory-interpolation, .github/skills/bulktrajblend-trajectory-interpolation and .opencode/skills/bulktrajblend-trajectory-interpolation in your project.

What does Bulktrajblend Trajectory Interpolation need to run?

SKILL.md names no scripts, command-line tools or credentials: Bulktrajblend Trajectory Interpolation is instructions for the agent only.

Does Bulktrajblend Trajectory Interpolation access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Bulktrajblend Trajectory Interpolation safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bulktrajblend Trajectory Interpolation use?

No licence was found for Bulktrajblend Trajectory Interpolation or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bulktrajblend Trajectory Interpolation use?

About 1.1k tokens (SKILL.md is roughly 4.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bulktrajblend Trajectory Interpolation?

Skills that share tags, products or a category with Bulktrajblend Trajectory Interpolation: Alphagenome Single Variant Analysis (google-deepmind/science-skills, 3.2k stars), 13C Metabolic Flux Analysis (K-Dense-AI/scientific-agent-skills, 48k stars), Clinvar Database (google-deepmind/science-skills, 3.2k stars) and Metabolic Study Planner (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bulktrajblend Trajectory Interpolation?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.