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Agent skill

Bio Tcr Bcr Analysis Scirpy Analysis

by FreedomIntelligence in FreedomIntelligence/OpenClaw-Medical-Skills

Analyze single-cell TCR and BCR data integrated with gene expression using scirpy.

No licenceAuto-check passedResearch & Science

Install Bio Tcr Bcr Analysis Scirpy Analysis

skills CLI
$ npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-scirpy-analysis -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install FreedomIntelligence/OpenClaw-Medical-Skills bio-tcr-bcr-analysis-scirpy-analysis --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/FreedomIntelligence/OpenClaw-Medical-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/bio-tcr-bcr-analysis-scirpy-analysis .claude/skills/bio-tcr-bcr-analysis-scirpy-analysis && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
bio-tcr-bcr-analysis-scirpy-analysis
GitHub stars
3.1k
Used in
1 other repo
Token cost
~1.1k tokens
SKILL.md length
181 words
Files
3
Skills in repo
279
Repo updated
First seen
Licence
None found

At a glance

Analyze single-cell TCR and BCR data integrated with gene expression using scirpy.

  • Working with 10x Genomics VDJ data alongside scRNA-seq
  • SKILL.md covers Version Compatibility, Load VDJ Data, Quality Control and Define Clonotypes, plus 7 more sections
  • Runs Python scripts from its folder; calls pip
  • Integrating immune receptor information with cell state analysis

What it does

Bio Tcr Bcr Analysis Scirpy Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Analyze single-cell TCR and BCR data integrated with gene expression using scirpy. Use when working with 10x Genomics VDJ data alongside scRNA-seq or when integrating immune receptor information with cell state analysis.

Its SKILL.md is about 1.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files (for example `examples/scirpy_integration.py` and `usage-guide.md`).

It sits in Research & Science, covering Bioinformatics. The repository describes itself as: The largest open-source medical AI skills library for OpenClaw🦞.

When your agent uses it

  • Working with 10x Genomics VDJ data alongside scRNA-seq
  • Integrating immune receptor information with cell state analysis

Example prompts

  • “/bio-tcr-bcr-analysis-scirpy-analysis”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit b1f9b6e. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships script files (Python), which the agent can run.

    Shell commands in SKILL.md call:

    • pip

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Bio Tcr Bcr Analysis Scirpy Analysis loads about 1.1k tokens when it runs. Until then it costs about 64 tokens; SKILL.md has 181 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~64
When it runs · the whole SKILL.md, loaded when a task matches
~1.1k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 181 words (~1,141 tokens).

“Reference examples tested with: MiXCR 4.6+, VDJtools 1.2.1+, scanpy 1.10+”

— opening of SKILL.md by FreedomIntelligence
name
bio-tcr-bcr-analysis-scirpy-analysis
tool_type
python
primary_tool
scirpy

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files in skills/bio-tcr-bcr-analysis-scirpy-analysis of FreedomIntelligence/OpenClaw-Medical-Skills.

  • SKILL.md
  • examples/scirpy_integration.py
  • usage-guide.md

Open the folder on GitHubat commit b1f9b6e

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in FreedomIntelligence/OpenClaw-Medical-Skills, which our catalogue first saw on October 9, 2026.

Compare with similar skills

Bio Tcr Bcr Analysis Scirpy Analysis next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Bio Tcr Bcr Analysis Scirpy Analysis compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Bio Tcr Bcr Analysis Scirpy Analysis this skillFreedomIntelligence/OpenClaw-Medical-Skills3.1k1 repos~1.1kAutomated safety check: PassNone
Alphagenome Single Variant Analysisgoogle-deepmind/science-skills3.2k2 repos~3kAutomated safety check: NotesApache-2.0
13C Metabolic Flux AnalysisK-Dense-AI/scientific-agent-skills48k1 repos~3.2kAutomated safety check: PassMIT
Clinvar Databasegoogle-deepmind/science-skills3.2k2 repos~3.9kAutomated safety check: NotesApache-2.0
Metabolic Study Planneraiming-lab/AutoResearchClaw15k—~1.9kAutomated safety check: PassMIT
Dbsnp Databasegoogle-deepmind/science-skills3.2k2 repos~3.4kAutomated safety check: NotesApache-2.0

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Categories

Questions about Bio Tcr Bcr Analysis Scirpy Analysis

What does Bio Tcr Bcr Analysis Scirpy Analysis do?

Analyze single-cell TCR and BCR data integrated with gene expression using scirpy. Bio Tcr Bcr Analysis Scirpy Analysis is an agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. Analyze single-cell TCR and BCR data integrated with gene expression using scirpy.

When should I use Bio Tcr Bcr Analysis Scirpy Analysis?

Bio Tcr Bcr Analysis Scirpy Analysis fits situations like: working with 10x Genomics VDJ data alongside scRNA-seq; integrating immune receptor information with cell state analysis.

How do I install Bio Tcr Bcr Analysis Scirpy Analysis in Claude Code?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-scirpy-analysis -a claude-code`. Or copy the skill folder (skills/bio-tcr-bcr-analysis-scirpy-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .claude/skills/bio-tcr-bcr-analysis-scirpy-analysis in your project. Claude Code loads it when a task matches its description.

How do I install Bio Tcr Bcr Analysis Scirpy Analysis in Codex?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-scirpy-analysis -a codex`. Or copy the skill folder (skills/bio-tcr-bcr-analysis-scirpy-analysis in FreedomIntelligence/OpenClaw-Medical-Skills) into .agents/skills/bio-tcr-bcr-analysis-scirpy-analysis in your project. Codex loads it when a task matches its description.

Can I use Bio Tcr Bcr Analysis Scirpy Analysis in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-scirpy-analysis -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/bio-tcr-bcr-analysis-scirpy-analysis, .gemini/skills/bio-tcr-bcr-analysis-scirpy-analysis, .github/skills/bio-tcr-bcr-analysis-scirpy-analysis and .opencode/skills/bio-tcr-bcr-analysis-scirpy-analysis in your project.

What does Bio Tcr Bcr Analysis Scirpy Analysis need to run?

Going by SKILL.md and its folder, Bio Tcr Bcr Analysis Scirpy Analysis needs Python for the scripts in its folder and the command-line tools its instructions call (pip). Our summary lists: Python 3.

Does Bio Tcr Bcr Analysis Scirpy Analysis access the network?

SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Bio Tcr Bcr Analysis Scirpy Analysis safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Bio Tcr Bcr Analysis Scirpy Analysis use?

No licence was found for Bio Tcr Bcr Analysis Scirpy Analysis or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Bio Tcr Bcr Analysis Scirpy Analysis use?

About 1.1k tokens (SKILL.md is roughly 4.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Bio Tcr Bcr Analysis Scirpy Analysis?

Skills that share tags, products or a category with Bio Tcr Bcr Analysis Scirpy Analysis: Alphagenome Single Variant Analysis (google-deepmind/science-skills, 3.2k stars), 13C Metabolic Flux Analysis (K-Dense-AI/scientific-agent-skills, 48k stars), Clinvar Database (google-deepmind/science-skills, 3.2k stars) and Metabolic Study Planner (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Bio Tcr Bcr Analysis Scirpy Analysis?

FreedomIntelligence (a GitHub organization) maintains it in FreedomIntelligence/OpenClaw-Medical-Skills, which has 3,053 GitHub stars. The repository holds 279 skills in this directory. The repository was last updated on July 21, 2026.

Source: FreedomIntelligence/OpenClaw-Medical-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.