Scientific Writing
neflibata-feng/MyArxiv-Agent
Core skill for the deep research and writing tool. An agent skill from neflibata-feng/MyArxiv-Agent.
A skill your agent uses when deciding which jama- sub-skill to invoke next, or when sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical…
Install Jama Workflow
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install franklee16/academic-research-skills jama-workflow --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .claude/skills/jama-workflow && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .claude/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflowType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install franklee16/academic-research-skills jama-workflow --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .agents/skills/jama-workflow && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .agents/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install franklee16/academic-research-skills jama-workflow --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .cursor/skills/jama-workflow && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .cursor/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/franklee16/academic-research-skills.git --path Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install franklee16/academic-research-skills jama-workflow --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .gemini/skills/jama-workflow && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .gemini/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install franklee16/academic-research-skills jama-workflowInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .github/skills/jama-workflow && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .github/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add franklee16/academic-research-skills --skill jama-workflow -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install franklee16/academic-research-skills jama-workflow --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow .opencode/skills/jama-workflow && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "jama-workflow" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow into .opencode/skills/jama-workflow/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "jama-workflow", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
jama-workflow- GitHub stars
- 223
- Used in
- 1 other repo
- Token cost
- ~1.4k tokens
- SKILL.md length
- 567 words
- Files
- 1
- Skills in repo
- 1,617
- Repo updated
- First seen
- Licence
- None found
At a glance
A skill your agent uses when deciding which jama- sub-skill to invoke next, or when sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical…
- Works in 11 steps: jama-scope-fit — decide whether JAMA is… → jama-study-design — lock the design and… → jama-reporting-standards — choose and… → …
- Deciding which jama- sub-skill to invoke next
- SKILL.md covers Overview, When to trigger, Routing table and Default order, plus 3 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Jama Workflow is an agent skill from franklee16/academic-research-skills. Use when deciding which jama- sub-skill to invoke next, or when sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical Association). Routes — does not replace — the specialized skills.
Its SKILL.md is about 1.4k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science. It works with Prisma. The repository describes itself as: Comprehensive collection of Claude Code skills for academic research in economics, finance, and social sciences.
When your agent uses it
- Deciding which jama- sub-skill to invoke next
- Sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical Association)
Example prompts
- “/jama-workflow”
Workflow steps
11 steps, taken from the first numbered list in SKILL.md.
- jama-scope-fit — decide whether JAMA is the right home before investing more
- jama-study-design — lock the design and its internal-validity safeguards
- jama-reporting-standards — choose and complete the EQUATOR checklist + diagram
- jama-statistics — pre-specified outcomes, effect sizes + 95% CIs, multiplicity
- jama-figures-tables — finalize the flow diagram, baseline table, main exhibits
- jama-structured-abstract — JAMA structured abstract + Key Points box
- jama-ethics-registration — registration, IRB/consent, ICMJE disclosures, data sharing
- jama-writing-style — tighten prose, remove spin, match house style (polish)
- jama-cover-letter — editor-facing pitch of general medical importance
- jama-submission — final preflight against author instructions
- jama-peer-review-revision — response after the decision letter
What it can do on your machine
Read from SKILL.md and the folder at commit 9a4b2db. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Jama Workflow loads about 1.4k tokens when it runs. Until then it costs about 63 tokens; SKILL.md has 567 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 567 words (~1,350 tokens).
“This is the router. It does not replace any specialized skill; it tells you which jama-* skill to use for the stage you are at when preparing an Original Investigation (or systematic review / meta-analysis) for JAMA.”
- name
- jama-workflow
Files
Just SKILL.md in Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow of franklee16/academic-research-skills.
Open the folder on GitHubat commit 9a4b2db
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in franklee16/academic-research-skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Jama Workflow next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Jama Workflow this skillfranklee16/academic-research-skills | 223 | 1 repos | ~1.4k | Automated safety check: Pass | None | |
| Scientific Writingneflibata-feng/MyArxiv-Agent | 126 | 18 repos | ~8.4k | Automated safety check: Notes | MIT | |
| Lit Searchluwill/research-skills | 858 | — | ~3.5k | Automated safety check: Notes | MIT | |
| Ma Search Bibliographyhtlin222/meta-pipe | 139 | — | ~2.1k | Automated safety check: Notes | Custom licence | |
| Scientific Writingjimmc414/Kosmos | 595 | 1 repos | ~4.1k | Automated safety check: Pass | None | |
| Ma Publication Qualityhtlin222/meta-pipe | 139 | — | ~1k | Automated safety check: Pass | Custom licence |
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Related
Works with
Categories
Questions about Jama Workflow
What does Jama Workflow do?
A skill your agent uses when deciding which jama- sub-skill to invoke next, or when sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical…. Jama Workflow is an agent skill from franklee16/academic-research-skills. Use when deciding which jama- sub-skill to invoke next, or when sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical Association).
When should I use Jama Workflow?
Jama Workflow fits situations like: deciding which jama- sub-skill to invoke next; sequencing a clinical manuscript from scope check through revision for JAMA (Journal of the American Medical Association).
How do I install Jama Workflow in Claude Code?
Run `npx skills add franklee16/academic-research-skills --skill jama-workflow -a claude-code`. Or copy the skill folder (Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow in franklee16/academic-research-skills) into .claude/skills/jama-workflow in your project. Claude Code loads it when a task matches its description.
How do I install Jama Workflow in Codex?
Run `npx skills add franklee16/academic-research-skills --skill jama-workflow -a codex`. Or copy the skill folder (Awesome-Journal-Skills-main/JAMA-Skills/skills/jama-workflow in franklee16/academic-research-skills) into .agents/skills/jama-workflow in your project. Codex loads it when a task matches its description.
Can I use Jama Workflow in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add franklee16/academic-research-skills --skill jama-workflow -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/jama-workflow, .gemini/skills/jama-workflow, .github/skills/jama-workflow and .opencode/skills/jama-workflow in your project.
What does Jama Workflow need to run?
SKILL.md names no scripts, command-line tools or credentials: Jama Workflow is instructions for the agent only.
Does Jama Workflow access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Jama Workflow safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Jama Workflow use?
No licence was found for Jama Workflow or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Jama Workflow use?
About 1.4k tokens (SKILL.md is roughly 5.4k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Jama Workflow?
Skills that share tags, products or a category with Jama Workflow: Scientific Writing (neflibata-feng/MyArxiv-Agent, 126 stars), Lit Search (luwill/research-skills, 858 stars), Ma Search Bibliography (htlin222/meta-pipe, 139 stars) and Scientific Writing (jimmc414/Kosmos, 595 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Jama Workflow?
franklee16 (a GitHub user) maintains it in franklee16/academic-research-skills, which has 223 GitHub stars. The repository holds 1,617 skills in this directory. The repository was last updated on September 18, 2026.
Source: franklee16/academic-research-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.