Agent skill

Plos Open Access API

by wentorai in wentorai/research-plugins

Search PLOS open access journals with full-text Solr-powered API

MITAuto-check passedBackend & APIs

Install Plos Open Access API

skills CLI
$ npx skills add wentorai/research-plugins --skill plos-open-access-api -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install wentorai/research-plugins plos-open-access-api --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/literature/search/plos-open-access-api .claude/skills/plos-open-access-api && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
plos-open-access-api
GitHub stars
298
Used in
1 other repo
Token cost
~1.5k tokens
SKILL.md length
259 words
Files
1
Skills in repo
405
Repo updated
First seen
Licence
MIT

At a glance

Search PLOS open access journals with full-text Solr-powered API

  • Backend & APIs work in your project
  • SKILL.md covers Overview, API Endpoint, Python Usage and Advanced Solr Queries, plus 2 more sections
  • Calls curl; reaches api.plos.org

What it does

Plos Open Access API is an agent skill from wentorai/research-plugins. Search PLOS open access journals with full-text Solr-powered API

Its SKILL.md is about 1.5k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Backend & APIs. The repository describes itself as: 350+ academic research skills, MCP configs, and plugins for Research-Claw and AI agents. The licence is MIT.

When your agent uses it

  • Backend & APIs work in your project

Example prompts

  • “/plos-open-access-api”

Requirements

  • Python 3

What it can do on your machine

Read from SKILL.md and the folder at commit bf44b3c. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Shell commands in SKILL.md call:

    • curl

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Hosts in commands or code, which the agent is likely to contact:

    • api.plos.org

    Also links to:

    • journals.plos.org
    • solr.apache.org

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Plos Open Access API loads about 1.5k tokens when it runs. Until then it costs about 21 tokens; SKILL.md has 259 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~21
When it runs · the whole SKILL.md, loaded when a task matches
~1.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from wentorai/research-plugins at commit bf44b3c, republished under its MIT licence (© wentorai). 259 words, ~1,546 tokens.

Download SKILL.mdSave it as .claude/skills/plos-open-access-api/SKILL.md (or your agent's skills folder).
name
plos-open-access-api
description
Search PLOS open access journals with full-text Solr-powered API

PLOS Search API

Overview

PLOS (Public Library of Science) publishes 7 peer-reviewed open access journals covering biology, medicine, genetics, and more. The Search API provides Solr-powered full-text search across all PLOS content — 350K+ articles, all freely available under CC-BY licenses. No authentication required. Particularly valuable for biomedical and life sciences systematic reviews.

API Endpoint

Base URL
https://api.plos.org/search
Search Examples
bash
# Basic keyword search
curl "https://api.plos.org/search?q=CRISPR+gene+editing&rows=20&wt=json"

# Search in specific fields
curl "https://api.plos.org/search?q=title:\"machine learning\"+AND+abstract:biomarker&wt=json"

# Filter by journal
curl "https://api.plos.org/search?q=microbiome&fq=journal:\"PLOS ONE\"&wt=json"

# Filter by date range
curl "https://api.plos.org/search?q=COVID-19+vaccine&\
fq=publication_date:[2024-01-01T00:00:00Z TO 2026-12-31T23:59:59Z]&wt=json"

# Filter by article type
curl "https://api.plos.org/search?q=climate+change&fq=article_type:\"Research Article\"&wt=json"

# Return specific fields only
curl "https://api.plos.org/search?q=deep+learning&fl=id,title,author,publication_date,score&wt=json"
Search Fields
FieldDescriptionExample
titleArticle titletitle:"attention mechanism"
abstractAbstract textabstract:neural+network
bodyFull text bodybody:transformer
authorAuthor nameauthor:"Vaswani"
subjectSubject areasubject:"Neuroscience"
journalJournal namejournal:"PLOS Medicine"
Query Parameters
ParameterDescriptionDefault
qSolr query (supports AND/OR/NOT)Required
fqFilter query (narrows without affecting score)None
flFields to return (comma-separated)All
rowsResults per page (max 999)10
startPagination offset0
sortSort orderscore desc
wtFormat: json or xmlxml
hlEnable highlightingfalse
Available Return Fields
FieldTypeDescription
idstringDOI
titlestringArticle title
authorarrayAuthor names
abstractstringAbstract text
bodystringFull text (large)
publication_datedatePublication date
journalstringJournal name
article_typestringArticle type
subjectarraySubject categories
scorefloatRelevance score
PLOS Journals
JournalScope
PLOS ONEMultidisciplinary
PLOS BiologyLife sciences
PLOS MedicineClinical medicine
PLOS GeneticsGenetics and genomics
PLOS Computational BiologyComputational biology
PLOS PathogensInfectious disease
PLOS Neglected Tropical DiseasesTropical medicine

Python Usage

python
import requests

BASE_URL = "https://api.plos.org/search"


def search_plos(query: str, rows: int = 20,
                journal: str = None,
                from_date: str = None,
                fields: str = None) -> list:
    """Search PLOS open access articles."""
    params = {
        "q": query,
        "wt": "json",
        "rows": rows,
        "fl": fields or "id,title,author,abstract,publication_date,journal,score",
    }

    fq_parts = []
    if journal:
        fq_parts.append(f'journal:"{journal}"')
    if from_date:
        fq_parts.append(
            f"publication_date:[{from_date}T00:00:00Z TO NOW]"
        )
    if fq_parts:
        params["fq"] = " AND ".join(fq_parts)

    resp = requests.get(BASE_URL, params=params)
    resp.raise_for_status()
    data = resp.json()

    results = []
    for doc in data.get("response", {}).get("docs", []):
        results.append({
            "doi": doc.get("id"),
            "title": doc.get("title"),
            "authors": doc.get("author", []),
            "date": doc.get("publication_date", "")[:10],
            "journal": doc.get("journal"),
            "abstract": (doc.get("abstract", [""])[0])[:300]
                        if isinstance(doc.get("abstract"), list)
                        else (doc.get("abstract", ""))[:300],
        })
    return results


def get_full_text(doi: str) -> str:
    """Retrieve full text body of a PLOS article."""
    params = {
        "q": f'id:"{doi}"',
        "fl": "body",
        "wt": "json",
    }
    resp = requests.get(BASE_URL, params=params)
    resp.raise_for_status()
    docs = resp.json().get("response", {}).get("docs", [])
    return docs[0].get("body", "") if docs else ""


# Example: search PLOS Computational Biology
papers = search_plos(
    "protein structure prediction",
    journal="PLOS Computational Biology",
    from_date="2024-01-01",
)
for p in papers:
    print(f"[{p['date']}] {p['title']}")
    print(f"  DOI: {p['doi']}")

# Example: full-text search across all PLOS
papers = search_plos("body:reinforcement+learning AND title:robot")
for p in papers:
    print(f"{p['title']} — {p['journal']}")

Advanced Solr Queries

bash
# Phrase proximity search (words within 5 of each other)
q=abstract:"machine learning"~5

# Boosted field search
q=title:"CRISPR"^2 OR abstract:"CRISPR"

# Wildcard search
q=title:neuro*

# Range query on dates
fq=publication_date:[2024-01-01T00:00:00Z TO 2024-12-31T23:59:59Z]

Rate Limits

No formal rate limit, but PLOS requests courtesy delays of 1 request per second for bulk operations. No authentication needed.

References

© wentorai, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

Just SKILL.md in skills/literature/search/plos-open-access-api of wentorai/research-plugins.

Open the folder on GitHubat commit bf44b3c

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in wentorai/research-plugins, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Plos Open Access API next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Plos Open Access API compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Plos Open Access API this skillwentorai/research-plugins2981 repos~1.5kAutomated safety check: PassMIT
Octo SummaryMininglamp-OSS/octo-cli918—~1kAutomated safety check: PassApache-2.0
Tech Decisionteam-attention/plugins-for-claude-natives8272 repos~1.2kAutomated safety check: PassMIT
Goosetown Researcher GitHubaaif-goose/goosetown155—~1.6kAutomated safety check: PassApache-2.0
Spatial S3 Domains SVGQING1105/ezST101—~476Automated safety check: PassMIT
Tech Decisionteam-attention/hoyeon173—~1.4kAutomated safety check: PassMIT

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Questions about Plos Open Access API

What does Plos Open Access API do?

Search PLOS open access journals with full-text Solr-powered API. Plos Open Access API is an agent skill from wentorai/research-plugins.

When should I use Plos Open Access API?

Plos Open Access API fits situations like: backend & APIs work in your project.

How do I install Plos Open Access API in Claude Code?

Run `npx skills add wentorai/research-plugins --skill plos-open-access-api -a claude-code`. Or copy the skill folder (skills/literature/search/plos-open-access-api in wentorai/research-plugins) into .claude/skills/plos-open-access-api in your project. Claude Code loads it when a task matches its description.

How do I install Plos Open Access API in Codex?

Run `npx skills add wentorai/research-plugins --skill plos-open-access-api -a codex`. Or copy the skill folder (skills/literature/search/plos-open-access-api in wentorai/research-plugins) into .agents/skills/plos-open-access-api in your project. Codex loads it when a task matches its description.

Can I use Plos Open Access API in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wentorai/research-plugins --skill plos-open-access-api -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/plos-open-access-api, .gemini/skills/plos-open-access-api, .github/skills/plos-open-access-api and .opencode/skills/plos-open-access-api in your project.

What does Plos Open Access API need to run?

Going by SKILL.md and its folder, Plos Open Access API needs the command-line tools its instructions call (curl). Our summary lists: Python 3.

Does Plos Open Access API access the network?

SKILL.md names 3 domains. In commands or code: api.plos.org; the agent is likely to contact it when it follows the instructions. As links in the text: journals.plos.org and solr.apache.org. This is read from the text; nothing was executed.

Is Plos Open Access API safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Plos Open Access API use?

Plos Open Access API is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Plos Open Access API use?

About 1.5k tokens (SKILL.md is roughly 6.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Plos Open Access API?

Skills that share tags, products or a category with Plos Open Access API: Octo Summary (Mininglamp-OSS/octo-cli, 918 stars), Tech Decision (team-attention/plugins-for-claude-natives, 827 stars), Goosetown Researcher GitHub (aaif-goose/goosetown, 155 stars) and Spatial S3 Domains SVG (QING1105/ezST, 101 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Plos Open Access API?

wentorai (a GitHub user) maintains it in wentorai/research-plugins, which has 298 GitHub stars. The repository holds 405 skills in this directory. The repository was last updated on June 19, 2026.

Source: wentorai/research-plugins on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.