Agent skill

Find Journal

by Aperivue in Aperivue/medsci-skills

A skill your agent uses when choosing where to submit a manuscript.

MITAuto-check passedResearch & Science

Install Find Journal

skills CLI
$ npx skills add Aperivue/medsci-skills --skill find-journal -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install Aperivue/medsci-skills find-journal --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/Aperivue/medsci-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/find-journal .claude/skills/find-journal && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
find-journal
GitHub stars
331
Token cost
~3.4k tokens
SKILL.md length
1,345 words
Files
114 (incl. scripts, references)
Skills in repo
54
Repo updated
First seen
Licence
MIT

At a glance

A skill your agent uses when choosing where to submit a manuscript.

  • Works in 5 steps: Input Collection → Theme Extraction → 5: Acceptance-Readiness & Design-Ceiling… → …
  • Choosing where to submit a manuscript
  • SKILL.md covers Phase 1: Input Collection, Phase 2: Theme Extraction, Phase 2.5:… and Phase 3: Profile Loading and…, plus 3 more sections
  • Calls python3 and pandoc

What it does

Find Journal is an agent skill from Aperivue/medsci-skills. Use when choosing where to submit a manuscript. Matches the abstract against curated journal profiles and returns ranked picks with scope fit, AI-disclosure policy, an acceptance-readiness pre-flight and a reject-fallback cascade. Impact and APC figures may be stale.

Its SKILL.md is about 3.4k tokens, which your agent loads only when the skill is triggered. The skill folder holds 115 other files, including scripts and reference files (for example `POLICY.md`, `references/acceptance_signals_schema.md` and `references/journal_profiles/AJKD.md`).

It sits in Research & Science. The repository describes itself as: Agent Skills for medical research — literature search, reporting-guideline & citation checks, statistics, publication figures, submission. Works with Claude Code, Codex, Cursor &… The licence is MIT.

When your agent uses it

  • Choosing where to submit a manuscript

Example prompts

  • “/find-journal”

Requirements

  • Python 3

Workflow steps

5 steps, taken from the step headings in SKILL.md.

  1. Input Collection
  2. Theme Extraction
  3. 5: Acceptance-Readiness & Design-Ceiling Pre-flight
  4. Profile Loading and Matching (2-Pass)
  5. Output

What it can do on your machine

Read from SKILL.md and the folder at commit 3b14ae2. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships 1 file in scripts/, which the agent can run.

    Shell commands in SKILL.md call:

    • python3
    • pandoc

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Find Journal loads about 3.4k tokens when it runs, and up to ~54k if it reads all its reference files. Until then it costs about 70 tokens; SKILL.md has 1,345 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~70
When it runs · the whole SKILL.md, loaded when a task matches
~3.4k
With references · SKILL.md plus every file in references/, read only if the agent opens them
~54k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.

SKILL.md

The full file from Aperivue/medsci-skills at commit 3b14ae2, republished under its MIT licence (© Aperivue). 1,345 words, ~3,399 tokens.

Download SKILL.mdSave it as .claude/skills/find-journal/SKILL.md (or your agent's skills folder). This skill also uses 113 other files; get the full folder from GitHub.
name
find-journal
description
Use when choosing where to submit a manuscript. Matches the abstract against curated journal profiles and returns ranked picks with scope fit, AI-disclosure policy, an acceptance-readiness pre-flight and a reject-fallback cascade. Impact and APC figures may be stale.
metadata.triggers
find journal, recommend journal, where to submit, which journal, journal selection, target journal, journal match

Find Journal Skill

Phase 1: Input Collection

Required Inputs
  1. Abstract text or key findings summary
  2. Study type: original research, meta-analysis, case report, technical note, review, letter, AI validation, diagnostic accuracy, etc.
Optional Inputs
  1. Preferred tier: Q1 / Q1-Q2 / any (default: any)
  2. OA preference: Full OA / Hybrid OK / No preference (default: no preference)
  3. Field focus: radiology, medical AI, clinical specialty, methodology, education, general medicine
  4. Journals to exclude: journals that have already rejected this manuscript

If only an abstract is given, infer the study type from it. When called from /write-paper or another skill, take the abstract and study type from the calling context and skip these questions.


Phase 2: Theme Extraction

From the abstract or key findings, extract: disease/condition; modality/technique; methodology (e.g., retrospective cohort, diagnostic accuracy, systematic review, RCT); population; and innovation type (new algorithm, clinical validation, workflow improvement, educational tool).


Phase 2.5: Acceptance-Readiness & Design-Ceiling Pre-flight

Editors screen importance/novelty and the design ceiling before scope fit (lack of novelty/importance is the top desk-rejection cause). This phase estimates that first filter, so the skill does not recommend a venue whose bar the design cannot clear. It is advisory, and its flags are not auto-fixable: the author decides.

2.5.1 Run the deterministic pre-flight (preferred)

If a manuscript or abstract file is available, run:

python3 ${CLAUDE_SKILL_DIR}/scripts/assess_acceptance_readiness.py <manuscript_or_abstract.md>
# add --json for a machine-readable report

It returns flags in four categories — DESIGN_CEILING, UNFIXABLE_DEFECT, IMPORTANCE_RISK, CLAIM_MISMATCH — and a ceiling verdict (NO LISTED SIGNAL MATCHED - NOT A DESIGN CLEARANCE … / IMPORTANCE-FRAMING REVIEW … / SPECIALTY / TOLERANT-VENUE OR DESIGN FIX … / HIGH-IMPACT VENUE UNLIKELY …).

The script reads UTF-8 markdown or plain text only. A .docx, .pdf, .doc or other non-text file exits 2 with no report ("No scan was run"): convert it (e.g. pandoc -t markdown) and rerun, or fall back to 2.5.2. It skips the References/Bibliography section.

Known limits. The scan matches listed phrases, line by line. It does not understand negation or context ("Unlike prior single-center studies…" still flags single-center), and it misses paraphrases ("one institution", "has not been externally validated", the same patients in training and test sets). So an empty result is not a clearance: apply the §3 taxonomy with judgement (as in 2.5.2) before treating feasibility as uncapped, and adjudicate each flag before it demotes a venue.

2.5.2 If only pasted text is available

Read ${CLAUDE_SKILL_DIR}/references/acceptance_signals_schema.md §3 (taxonomy and verdict bands), apply the same taxonomy to the pasted text with judgement, and assign the same ceiling verdict.

2.5.3 Carry the verdict forward

Record the ceiling verdict and its top flags for Phase 3.2 Axis 2 and for the Phase 4 Acceptance-Readiness Summary and Cascade plan. Do not block the recommendation on a ceiling: route to a venue the design can clear, or recommend a design change or presubmission inquiry.


Phase 3: Profile Loading and Matching (2-Pass)

3.1 Pass 1: Load Compact Profiles

Read both tiers and merge them into one profile set:

# Public (shipped with the skill)
${CLAUDE_SKILL_DIR}/references/journal_profiles/*.md

# User-local private (optional, may be empty or absent)
$HOME/.claude/private-journal-profiles/find-journal/*.md

On a filename collision the private copy wins (user override). If either directory is missing or empty, continue with the other and say which tier was unavailable. Count the profiles actually loaded after the merge and state the total in the output — never hard-code the count.

From each profile parse Scope, Scope Keywords, Article Types Accepted, Classification (Tier, OA, Field), Special Notes (includes a 1-line AI policy summary), and the optional Acceptance Signals block (format: ${CLAUDE_SKILL_DIR}/references/acceptance_signals_schema.md §1).

Do NOT read write-paper profiles in this pass — they are 4-5x larger and carry formatting detail irrelevant to matching.

3.2 Two-Axis Scoring (scope fit × acceptance feasibility)

Score each journal on two independent axes: scope fit ("does this journal cover my topic?") and acceptance feasibility ("can this manuscript's design and importance clear this journal's bar?"). Keep them separate — a perfect scope match can still desk-reject the design.

Axis 1 — Scope fit. Compute a composite scope-fit score:

FactorWeightDescription
Scope alignment40%How well the manuscript's themes match the journal's scope and keywords
Study type fit25%Whether the journal accepts this article type and values this methodology
Tier match20%Alignment with user's preferred tier (if specified)
OA match10%Alignment with user's OA preference (if specified)
Special fit5%Bonus for unique alignment with journal's Special Notes

Axis 2 — Acceptance feasibility. Weigh the Phase 2.5 ceiling verdict against each journal's Acceptance Signals (selectivity band, desk-reject triggers, design expectations); for a profile without that block, use its Special Notes plus the Phase 2.5 taxonomy. Assign High / Medium / Low:

  • Low / ceiling-mismatch when the journal's bar is one the manuscript's ceiling cannot clear (e.g., a highly-selective venue that desk-rejects single-center surrogate-endpoint designs, and the manuscript is exactly that).
  • High when no ceiling signal collides with the journal's stated bar.

Report a band with reasons, NEVER an acceptance probability, because no acceptance-rate data source exists and a number would be false precision (schema §4).

Show full SKILL.md (557 more words)Show less
3.3 Filtering

Before scoring, exclude journals on the user's exclusion list and journals that do not accept the manuscript's study type (e.g., a case report to a journal that only takes original research). If no journal survives, relax the filters — OA constraint first, then tier — and re-score.

3.4 Ranking

Rank primarily by the Axis-1 scope-fit score, then apply Axis 2:

  • Demote (or, if the mismatch is severe, drop below a better-feasibility peer) any journal whose acceptance feasibility is Low / ceiling-mismatch.
  • Never silently demote — always carry the reason so Phase 4 can surface it.
  • Select the top 5 by the feasibility-adjusted order. If a strong scope match is demoted for feasibility, still mention it in the comparison note with the mismatch spelled out (the author may choose to fix the design rather than change venue).
3.5 Pass 2: Enrich Top-5

For each top-5 journal, look for a detailed write-paper profile in both tiers (private wins on collision):

# Public
${CLAUDE_SKILL_DIR}/../write-paper/references/journal_profiles/{journal_filename}

# User-local private
$HOME/.claude/private-journal-profiles/write-paper/{journal_filename}

If found, take from it: manuscript types and word limits, abstract format, statistical reporting requirements, the full 5-field AI Writing Disclosure Policy, common rejection reasons, and Acceptance Signals (these sharpen the Axis-2 call and the cascade plan). If none is found or the directory is not accessible, use the compact profile only.


Phase 4: Output

Every journal fact you print (URLs, article types, OA model, AI policy) comes from the loaded profile or from the journal's own website; never invent journal metadata, an impact factor, an APC or a submission policy.

For each of the top 5 recommended journals, present:

### Rank [N]: [Journal Name] ([Tier])

**Scope fit:** [2-3 sentences explaining why this manuscript matches this journal's scope.
Reference specific keywords, disease areas, or methodological preferences from the profile.]

**Article types accepted:** [relevant types from profile]

**Open Access:** [Full OA / Hybrid / Subscription]

**Acceptance feasibility:** [High / Medium / Low] — [1 line: how the manuscript's
Phase 2.5 ceiling meets this journal's bar; spell out any mismatch, e.g., "scope fit
High, but this highly-selective venue desk-rejects single-center surrogate-endpoint
designs — add external validation or target a selective/accessible venue"]

**Homepage:** [URL]
**Author guidelines:** [URL]

**AI disclosure:** [Required / Recommended / Not specified] — [brief summary of permitted scope and disclosure location, if available in profile]

After all 5, add a 2-3 sentence comparison note on the key tradeoffs between the top choices (e.g., scope breadth vs. specialty depth, tier vs. acceptance feasibility). Then add the two blocks below, then the Mandatory Disclaimer.

Acceptance-Readiness Summary
---
### Acceptance-Readiness Summary

**Ceiling verdict:** [from Phase 2.5]
**Top flags:** [the 2-4 most consequential design-ceiling / unfixable / importance flags, each with its 1-line reason]
**Implication for venue tier:** [1-2 sentences — e.g., "An unfixable single-center +
surrogate-endpoint ceiling makes flagship venues unlikely without external validation;
the recommendations above are routed to venues this design can clear."]

_Advisory only — a risk band, not an acceptance prediction; flags are not auto-fixable._
Cascade plan
---
### Cascade plan (primary → reject-fallback)

1. **Primary:** [top recommendation] — [why first]
2. **If rejected:** [fallback 1] — [same-publisher transfer if applicable, else one tier
   down / different scope angle]. An editor's transfer offer within the same publisher
   is usually worth taking: the manuscript skips a fresh desk screen.
3. **Then:** [fallback 2]

[If the Phase 2.5 risk is IMPORTANCE rather than design, recommend a **presubmission
inquiry** to the primary target before full submission — it lets the editor quick-assess
contribution/fit and saves a desk-reject cycle.]

[If a confidential corresponding-author editor-bar overlay exists in
`$HOME/.claude/private-journal-profiles/find-journal/`, its notes have already been
merged into the per-journal feasibility calls above.]

Mandatory Disclaimer

Always append this disclaimer at the bottom of every recommendation output:

---
**Important Disclaimer**

Impact Factor, APC fees, acceptance rates, and turnaround times change frequently
and are subject to copyright restrictions. Please verify current values directly
at each journal's homepage before making your submission decision.

Recommended verification sources:
- Journal Citation Reports (JCR) via institutional access: for Impact Factor
- Journal homepage -> Author Guidelines: for current APC and formatting requirements
- Clarivate Master Journal List: for indexing status

Special Modes

Post-Rejection Mode

When the manuscript was rejected by a specific journal:

  1. Exclude the rejecting journal.
  2. Distinguish the rejection type — it changes the advice:
    • Desk-reject (no peer review) — usually an importance/novelty or design-ceiling verdict, not a fixable-revision signal. Re-run Phase 2.5; if a ceiling or importance flag is present, the next same-tier venue will likely desk-reject again. Route one or two tiers down (or to a tolerant/accessible venue), or advise the design/importance fix first, and consider a presubmission inquiry.
    • Post-peer-review reject — prefer a same-publisher transfer (Springer Nature Transfer Desk / Elsevier Article Transfer Service / Wiley / Nature Portfolio) that carries the referee reports; otherwise same tier or one down, with the fatal flaw addressed.
  3. If rejected from Q1 other than by a ceiling/importance desk-reject, recommend a mix of Q1 (different scope angle) and strong Q2.
  4. In each scope-fit explanation, note how the recommendation differs from the rejected journal's focus.
  5. Suggest scope adjustments — or, when Phase 2.5 found a ceiling, design changes — that might improve feasibility for the new target.
Case Report Mode

When the study type is case report, prioritize journals known for valuing educational or rare cases. If fewer than 5 profiled journals accept case reports, say so and suggest the user consider case-report-specific journals outside the profile set.

Submission Directory Scaffolding

When the user selects a target journal, create submission/{journal_short}/ (lowercase with underscores, e.g., radiology_ai, european_radiology, ajr) and report the path so /write-paper Phase 8+ and /peer-review know where to write:

submission/
└── {journal_short}/          # e.g., radiology_ai/
    ├── cover_letter.md       # Generated by /write-paper Phase 8+
    ├── checklist.md          # Journal-specific submission checklist
    └── peer_review.md        # Generated by /peer-review (journal scope-aware)

© Aperivue, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

SKILL.md and 113 other files (scripts, references) in skills/find-journal of Aperivue/medsci-skills.

  • SKILL.md
  • POLICY.md
  • references/acceptance_signals_schema.md
  • references/journal_profiles/AJKD.md
  • references/journal_profiles/AJNR.md
  • references/journal_profiles/AJR.md
  • references/journal_profiles/Abdominal_Radiology.md
  • references/journal_profiles/Academic_Radiology.md
  • references/journal_profiles/Annals_of_Internal_Medicine.md
  • references/journal_profiles/Annals_of_Oncology.md
  • references/journal_profiles/Artificial_Intelligence_in_Medicine.md
  • references/journal_profiles/BJR_Case_Reports.md
  • references/journal_profiles/BMC_Medicine.md
  • references/journal_profiles/BMJ_Case_Reports.md
  • references/journal_profiles/British_Journal_of_Radiology.md
  • references/journal_profiles/CVIR.md
  • references/journal_profiles/Cancer_Research_and_Treatment.md
  • references/journal_profiles/Chest.md
  • references/journal_profiles/Clinical_Cancer_Research.md
  • … and 95 more

Open the folder on GitHubat commit 3b14ae2

Compare with similar skills

Find Journal next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Find Journal compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Find Journal this skillAperivue/medsci-skills331—~3.4kAutomated safety check: PassMIT
Hypothesis Generationspacering-net/codeg3.9k14 repos~3.6kAutomated safety check: NotesMIT
GitHub Deep Researchbytedance/deer-flow84k4 repos~1.3kAutomated safety check: PassMIT
Nature Paper CardYuan1z0825/nature-skills47k2 repos~2.1kAutomated safety check: PassApache-2.0
Content Research Writerweapp-tailwindcss/weapp-tailwindcss1.9k25 repos~3.5kAutomated safety check: PassMIT
Peer Reviewspacering-net/codeg3.9k17 repos~5.9kAutomated safety check: NotesMIT

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Questions about Find Journal

What does Find Journal do?

A skill your agent uses when choosing where to submit a manuscript. Find Journal is an agent skill from Aperivue/medsci-skills. Use when choosing where to submit a manuscript.

When should I use Find Journal?

Find Journal fits situations like: choosing where to submit a manuscript.

How do I install Find Journal in Claude Code?

Run `npx skills add Aperivue/medsci-skills --skill find-journal -a claude-code`. Or copy the skill folder (skills/find-journal in Aperivue/medsci-skills) into .claude/skills/find-journal in your project. Claude Code loads it when a task matches its description.

How do I install Find Journal in Codex?

Run `npx skills add Aperivue/medsci-skills --skill find-journal -a codex`. Or copy the skill folder (skills/find-journal in Aperivue/medsci-skills) into .agents/skills/find-journal in your project. Codex loads it when a task matches its description.

Can I use Find Journal in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add Aperivue/medsci-skills --skill find-journal -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/find-journal, .gemini/skills/find-journal, .github/skills/find-journal and .opencode/skills/find-journal in your project.

What does Find Journal need to run?

Going by SKILL.md and its folder, Find Journal needs the command-line tools its instructions call (python3 and pandoc). Our summary lists: Python 3.

Does Find Journal access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Find Journal safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.

What licence does Find Journal use?

Find Journal is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Find Journal use?

About 3.4k tokens (SKILL.md is roughly 14k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 51k tokens, read only when the agent opens those files.

What are the alternatives to Find Journal?

Skills that share tags, products or a category with Find Journal: Hypothesis Generation (spacering-net/codeg, 3.9k stars), GitHub Deep Research (bytedance/deer-flow, 84k stars), Nature Paper Card (Yuan1z0825/nature-skills, 47k stars) and Content Research Writer (weapp-tailwindcss/weapp-tailwindcss, 1.9k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Find Journal?

Aperivue (a GitHub organization) maintains it in Aperivue/medsci-skills, which has 331 GitHub stars. The repository holds 54 skills in this directory. The repository was last updated on October 5, 2026.

Source: Aperivue/medsci-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.