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Scanpy · K-Dense-AI/scientific-agent-skills
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. | K-Dense-AI/ | 48k | 1 repo | ~4.2k | Automated safety check: Pass | MIT | 6 days ago |
| 2 | Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. | K-Dense-AI/ | 48k | 1 repo | ~4.2k | Automated safety check: Pass | MIT | 6 days ago |
| 3 | 3.Scvelo Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts. | K-Dense-AI/ | 48k | 1 repo | ~3.1k | Automated safety check: Pass | BSD-3-Clause | 6 days ago |
| 4 | 4.Scanpy Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection, PCA/UMAP/t-SNE, clustering, exploratory marker ranking, pseudobulk preparation, visualization, and Seurat or… | K-Dense-AI/ | 48k | 1 repo | ~5.1k | Automated safety check: Pass | BSD-3-Clause | 6 days ago |
| 5 | Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. | K-Dense-AI/ | 48k | 1 repo | ~3.4k | Automated safety check: Notes | MIT | 6 days ago |
| 6 | Fits probabilistic models for single-cell omics, including scVI batch integration, scANVI annotation, totalVI CITE-seq, MultiVI RNA/ATAC integration, and posterior differential expression. | K-Dense-AI/ | 48k | 1 repo | ~2.6k | Automated safety check: Pass | BSD-3-Clause | 6 days ago |
| 7 | 7.Anndata Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. | K-Dense-AI/ | 48k | 1 repo | ~3.9k | Automated safety check: Notes | BSD-3-Clause | 6 days ago |
