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NCBI · REST APIs
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species… | GPTomics/ | 1.2k | 2 repos | ~3.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | Tests gene lists, ranked vectors, and fold-change vectors against KEGG pathways and modules with clusterProfiler enrichKEGG/enrichMKEGG (ORA), gseKEGG (GSEA), and SPIA/graphite (signed-topology… | GPTomics/ | 1.2k | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 4 | KEGG REST API (academic only). An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.6k | Automated safety check: Pass | Unknown | 12 days ago |
| 5 | Run sequence similarity searches via the NCBI BLAST REST API | wentorai/ | 298 | 1 repo | ~1.6k | Automated safety check: Pass | MIT | 3 mo ago |
| 6 | Query NCBI dbSNP for SNP records by rsID, gene, or region via E-utilities and Variation Services REST API. | jaechang-hits/ | 374 | 1 repo | ~7.3k | Automated safety check: Pass | CC0-1.0 | 12 days ago |
| 7 | ENA REST API for sequences, reads, assemblies, and annotations. | jaechang-hits/ | 374 | 1 repo | ~5.3k | Automated safety check: Pass | Unknown | 12 days ago |
