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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | 1.Jj Flow jujutsu (jj) command cheatsheet for this colocated jj+git Bioconductor repo. | seandavi/ | 118 | — | ~981 | Automated safety check: Pass | Unknown | 1 mo ago |
| 2 | Download large datasets from NCBI efficiently using EPost, history server, batching, rate limiting, and retry logic. | GPTomics/ | 1.2k | 2 repos | ~3.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 3 | Download raw sequencing reads from NCBI SRA using sra-tools (prefetch, fasterq-dump, vdb-validate) or the ENA mirror. | GPTomics/ | 1.2k | 2 repos | ~4k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Tests gene lists, ranked vectors, and fold-change vectors against KEGG pathways and modules with clusterProfiler enrichKEGG/enrichMKEGG (ORA), gseKEGG (GSEA), and SPIA/graphite (signed-topology… | GPTomics/ | 1.2k | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Query ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. | FreedomIntelligence/ | 3.1k | — | ~1.4k | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Biodiversity data access, species occurrence, and ecological tools | wentorai/ | 298 | 1 repo | ~2.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 7 | Run sequence similarity searches via the NCBI BLAST REST API | wentorai/ | 298 | 1 repo | ~1.6k | Automated safety check: Pass | MIT | 3 mo ago |
