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Docker · Reproducible research
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Validate the get-started experience of Open Edge Platform (OEP) software components from the perspective of a first-time user. | open-edge-platform/ | 140 | — | ~3.3k | Automated safety check: Pass | Apache-2.0 | yesterday |
| 2 | Sets up and maintains AzureML-ready Python projects as uv workspaces with devcontainers, a Makefile and job YAML, so local runs match cloud jobs and experiments stay reproducible. | Kilo-Org/ | 190 | — | ~3.1k | Automated safety check: Notes | MIT | 13 days ago |
| 3 | Export any bioinformatics analysis as a reproducible bundle with Conda environment, Singularity container definition, and Nextflow pipeline. | ClawBio/ | 1.2k | 3 repos | ~413 | Automated safety check: Pass | MIT | 2 days ago |
| 4 | Runs and configures curated nf-core community Nextflow pipelines (rnaseq, sarek, atacseq, methylseq, ampliseq, taxprofiler, fetchngs) reproducibly, pinning the pipeline revision with -r and… | GPTomics/ | 1.2k | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 5 | Authors bioinformatics pipelines in WDL (Workflow Description Language) run by Cromwell or miniwdl, targeting the GATK/Broad and Terra/AnVIL/BioData Catalyst cloud ecosystem, with tasks, workflows… | GPTomics/ | 1.2k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 6 | This skill covers reproducible research pipelines and replication packages. | brycewang-stanford/ | 4.6k | — | ~3.3k | Automated safety check: Pass | Unknown | 6 days ago |
| 7 | Implement open science practices for a social science study. | joshzyj/ | 168 | — | ~14k | Automated safety check: Pass | Unknown | 23 days ago |
