By google-deepmind

Query ClinicalTrials.gov via APIv2. An agent skill from google-deepmind/science-skills.

google-deepmind/science-skills

A skill your agent uses when you want to look up, map, and search for short genetic variants (SNPs, indels) in NCBI's dbSNP database.

google-deepmind/science-skills

A skill your agent uses when you want to retrieve quantitative RNA expression data and variant eQTL information from the GTEx (Genotype-Tissue Expression) Project across 54 non-diseased tissue sites.

google-deepmind/science-skills

A skill your agent uses when you want to retrieve semi-quantitative protein expression and spatial localisation data from the Human Protein Atlas (HPA).

google-deepmind/science-skills

Retrieve and analyze AlphaFold predicted structures for a protein.

google-deepmind/science-skills

Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API.

google-deepmind/science-skills

Query the ChEMBL database for bioactive molecules, drug targets, bioactivity data, approved drugs, and chemical structures.

google-deepmind/science-skills

A skill your agent uses when needing clinical significance, pathogenicity classifications (e.g., Pathogenic, Benign, VUS), clinical evidence rationales, or finding "hard positive" benchmark controls…

google-deepmind/science-skills

Query Open Targets Platform for target-disease associations, drug target discovery, tractability/safety data, genetics/omics evidence, known drugs, for therapeutic target identification.

google-deepmind/science-skills

Query and search the EMBL-EBI Ontology Lookup Service (OLS) for biomedical ontology terms, definitions, and hierarchies across 250+ ontologies (e.g., GO, DOID, HP).

google-deepmind/science-skills

Query the Genome Aggregation Database (gnomAD). An agent skill from google-deepmind/science-skills.

google-deepmind/science-skills

Search for scientific papers, preprints, and publications on arXiv.

google-deepmind/science-skills

Query the OpenAlex scholarly database for research papers, authors, institutions, topics, sources, publishers, funders, geo-locations, and keywords.

google-deepmind/science-skills

Query, search, and download data from the openFDA API for drugs, devices, foods, tobacco, cosmetics, animal and veterinary products, substances, and transparency data.

google-deepmind/science-skills

A skill your agent uses when you want to search for or download experimentally-determined 3D structures for biomolecules (proteins, nucleic acids, bound ligands).

google-deepmind/science-skills

Query PubChem, search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.

google-deepmind/science-skills

Query the QuickGO and Evidence & Conclusion Ontology (ECO) REST API.

google-deepmind/science-skills

Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology.

google-deepmind/science-skills

Search PubMed for scientific literature, including published clinical trials.

google-deepmind/science-skills

Browse, filter, and download life sciences, biology, and medical preprints from bioRxiv and medRxiv.

google-deepmind/science-skills

Search Europe PMC for scientific literature and download open-access full texts and PDFs.

google-deepmind/science-skills

Visualize, analyze, and render protein and molecular structures using PyMOL.

google-deepmind/science-skills

Distills a completed user workflow or interaction into a reusable agent skill.

google-deepmind/science-skills

Query the ENCODE Registry of cis-Regulatory Elements (cCREs) via the SCREEN GraphQL API, or make custom queries to the ENCODE Portal REST API for experiments and files (ChIP-seq peaks, etc.).

google-deepmind/science-skills

Query the Ensembl database to resolve gene, transcript, and protein IDs, fetch genomic or protein sequences, retrieve gene structures (exons), and get variant consequence and effect predictions (VEP).

google-deepmind/science-skills

Query the JASPAR database for Transcription Factor (TF) binding profiles.

google-deepmind/science-skills

Retrieve protein and nucleotide sequences from NCBI databases using E-utilities.

google-deepmind/science-skills

Performs multiple sequence alignment of proteins with EBI Clustal Omega.

google-deepmind/science-skills

Searches for homologous protein sequences using MMseqs2 (fast, default) or BLAST (comprehensive, fallback).

google-deepmind/science-skills

Query the Reactome database (Analysis and Content Services).

google-deepmind/science-skills

Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser.

google-deepmind/science-skills

Queries the UniBind database for experimentally validated transcription factor (TF) binding sites.

google-deepmind/science-skills

Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef.

google-deepmind/science-skills

Constructs deep-links and URLs for the AlphaGenome Atlas website.

google-deepmind/science-skills

Performs 3D structural searches of proteins against various databases (PDB, AlphaFold, CATH, MGnify, etc.) using the Foldseek API.

google-deepmind/science-skills

Identify domains, families, and sites in proteins; find all proteins in a family or sharing a domain; explore species distribution for a domain; annotate genomes with protein families and GO terms.

google-deepmind/science-skills

Score, annotate, and analyze the functional impact of genetic variants using AlphaGenome Variant Impact (AVI) scores.

google-deepmind/science-skills

Ancient text restoration, attribution, dating, contextualization, and embedding via Aeneas (Latin) / Ithaca (Ancient Greek).

google-deepmind/science-skills

Instructions for handling API keys and credentials safely, verifying their presence, and prompting the user to add them if missing using a safe protocol.

google-deepmind/science-skills

Checks whether the uv Python package manager is installed and installs it if missing.

google-deepmind/science-skills