Research & Science · NumPy

Estimates reaction fluxes inside cells from steady-state carbon-13 labeling data with a bundled mfapy-based solver, and reports which fluxes the data pin down.

K-Dense-AI/scientific-agent-skills

Runs Cantera constant-volume or constant-pressure ignition simulations and reports temperature-based ignition delay with mechanism provenance and checks.

K-Dense-AI/scientific-agent-skills

Writes statistical analysis code for experimental data, runs it through a four-round review, and reports effect sizes, p-values and confidence intervals.

lingzhi227/agent-research-skills

Runs exploratory data analysis on tabular data after you confirm each column's measurement level, then writes CSV tables and a narrative summary.

TyrealQ/q-skills

Reads, edits, anonymizes and converts DICOM medical imaging files with pydicom, including pixel data extraction and compressed transfer syntaxes.

davila7/claude-code-templates

Runs reproducible math computations and counterexample searches with SymPy, NumPy and mpmath, logging evidence without presenting results as proofs.

tradecatlabs/vibe-coding-cn

Builds, fits, checks and compares Bayesian models in PyMC, from priors and NUTS sampling to variational inference, LOO and WAIC comparison, and diagnostics.

davila7/claude-code-templates

Computes RDKit physicochemical descriptors and molecular fingerprints from SMILES through a uv-run CLI script that skips and logs invalid molecules.

jinzhezenggroup/computational-chemistry-agent-skills

Runs a math modeling competition entry end to end, in AI-led or human-led mode, with Git checkpoints and self-verified solver code before it enters the LaTeX paper.

RealSeaberry/AutoMCM-Pro

Reads, inspects, and writes Flow Cytometry Standard (FCS) 2.0, 3.0, and 3.1 files with FlowIO.

K-Dense-AI/scientific-agent-skills

Performs RNA velocity analysis with scVelo from spliced and unspliced single-cell RNA counts.

K-Dense-AI/scientific-agent-skills

Builds the code for a frozen research experiment test-first, with leakage controls, seed handling and saved evidence so results can be rerun and audited.

Light0305/Light-skills

Performs exact symbolic mathematics with SymPy for algebra, calculus, equation solving, symbolic linear algebra, physics, and lambdify or LaTeX code generation.

K-Dense-AI/scientific-agent-skills

Write code that calls the installed nvMolKit Python API for GPU-accelerated, batched RDKit-style operations - Morgan fingerprints, Tanimoto/cosine similarity, ETKDG conformer embedding, MMFF/UFF…

NVIDIA-BioNeMo/bionemo-agent-toolkit

Parse and analyze multiple sequence alignments using Biopython.

GPTomics/bioSkills

Production-ready genomics and epigenomics data processing for BixBench questions.

wu-yc/LabClaw

Reads, queries, and writes bigWig indexed binary signal tracks (coverage, fold-change, conservation, methylation-rate) with pyBigWig (Python) and the UCSC Kent tools (bedGraphToBigWig…

GPTomics/bioSkills

Symbolic math in Python: exact algebra, calculus (derivatives, integrals, limits), equation solving, symbolic matrices, ODEs, code gen (lambdify, C/Fortran).

jaechang-hits/SciAgent-Skills

Data structure for annotated matrices in single-cell analysis; use when reading/writing .h5ad (or zarr) and exchanging data with the scverse ecosystem.

aipoch/medical-research-skills

Pure Python DICOM for medical imaging (CT, MRI, X-ray, ultrasound).

jaechang-hits/SciAgent-Skills

Python image processing for microscopy and bioimage analysis.

jaechang-hits/SciAgent-Skills

Python bridge to ImageJ2/Fiji for macros, plugins (Bio-Formats, TrackMate, Analyze Particles), NumPy↔ImagePlus/ImgLib2 exchange, and ImageJ Ops.

jaechang-hits/SciAgent-Skills