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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 2353 | 2353.Organ Aging Studio Interactive Goeminne proteomic aging clock with organ filters and per-protein contribution breakdown (protein NPX × coefficient). | ClawBio/ | 1.2k | — | ~2.1k | Automated safety check: Pass | MIT | 2 days ago |
| 2354 | End-to-end ML phylogenetic tree inference — MSA, trimming, ModelFinder, IQ-TREE2/RAxML-NG. | ClawBio/ | 1.2k | — | ~4.4k | Automated safety check: Pass | MIT | 2 days ago |
| 2355 | 2355.Pubmed Summariser Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries. | ClawBio/ | 1.2k | — | ~3.3k | Automated safety check: Pass | MIT | 2 days ago |
| 2356 | Count rare, high-impact loss-of-function variants carried in a VCF, annotated with molecular consequence and population allele frequency | ClawBio/ | 1.2k | — | ~2.5k | Automated safety check: Pass | MIT | 2 days ago |
| 2357 | 2357.Sample Qc Triage Deterministic multi-sample QC triage for identity, sex, contamination, and batch-shift outliers | ClawBio/ | 1.2k | — | ~1.7k | Automated safety check: Pass | MIT | 2 days ago |
| 2358 | Analyse 10x Visium spatial transcriptomics: SpaceRanger outs or spatial h5ad in, then QC, Leiden clustering, Wilcoxon markers, Moran's I, neighbourhood enrichment and co-occurrence in one local… | ClawBio/ | 1.2k | — | ~4.3k | Automated safety check: Pass | MIT | 2 days ago |
| 2359 | 2359.Biostudies Fetch Query metadata and download data from EMBL-EBI BioStudies, the database that describes biological studies and links their data across collections (ArrayExpress, BioImages, BioModels, EGA-linked… | ClawBio/ | 1.2k | — | ~4.2k | Automated safety check: Pass | MIT | 2 days ago |
| 2360 | 2360.Ena Fetch Query metadata and download sequencing data from the European Nucleotide Archive (ENA) via the Portal and Browser APIs. | ClawBio/ | 1.2k | — | ~4.9k | Automated safety check: Pass | MIT | 2 days ago |
| 2361 | 2361.Geo Fetch Query metadata and download data from the NCBI Gene Expression Omnibus (GEO). | ClawBio/ | 1.2k | — | ~4.7k | Automated safety check: Pass | MIT | 2 days ago |
| 2362 | 2362.Pride Fetch Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3. | ClawBio/ | 1.2k | — | ~4.2k | Automated safety check: Pass | MIT | 2 days ago |
| 2363 | Design and conduct action research and participatory studies | wentorai/ | 298 | 1 repo | ~1.9k | Automated safety check: Pass | MIT | 3 mo ago |
| 2364 | 2364.Math Reasoning Formal mathematical reasoning for research papers — derive equations, write proofs, formalize problem settings, select statistical tests, and generate LaTeX math notation. | lingzhi227/ | 390 | — | ~639 | Automated safety check: Pass | No licence | 7 mo ago |
| 2365 | 2365.Novelty Assessment Assess research idea novelty through systematic literature search. | lingzhi227/ | 390 | — | ~716 | Automated safety check: Pass | No licence | 7 mo ago |
| 2366 | 2366.Paper Revision Revise papers based on reviewer feedback. An agent skill from lingzhi227/agent-research-skills. | lingzhi227/ | 390 | — | ~668 | Automated safety check: Pass | No licence | 7 mo ago |
| 2367 | Write a specific section of an academic paper (Abstract, Introduction, Background, Related Work, Methods, Experiments, Results, Discussion/Conclusion) with section-specific guidance and two-pass… | lingzhi227/ | 390 | — | ~592 | Automated safety check: Pass | No licence | 7 mo ago |
| 2368 | 2368.Rebuttal Writing Write point-by-point rebuttals to reviewer comments. An agent skill from lingzhi227/agent-research-skills. | lingzhi227/ | 390 | — | ~656 | Automated safety check: Pass | No licence | 7 mo ago |
| 2369 | 2369.Related Work Writing Write Related Work sections that compare and contrast prior work with your approach. | lingzhi227/ | 390 | — | ~713 | Automated safety check: Pass | No licence | 7 mo ago |
| 2370 | 2370.Graph A skill your agent uses when the user asks about citation relationships, references, citing papers, shared references, bibliographic overlap, or graph-style paper connections. | ZimoLiao/ | 577 | — | ~237 | Automated safety check: Pass | MIT | 16 days ago |
| 2371 | Stage 2 of the spatial transcriptomics workflow — normalize 10x Visium data and cluster spatial spots. | QING1105/ | 101 | — | ~428 | Automated safety check: Pass | MIT | 1 mo ago |
| 2372 | End-to-end R workflow to simulate individual patient data (IPD) for a registered clinical trial using a g-formula causal-DAG simulator. | RConsortium/ | 120 | — | ~4.1k | Automated safety check: Pass | MIT | 7 days ago |
| 2373 | Expert guidance for selecting and parameterizing cognitive psychology experimental paradigms based on research questions | NeuroAIHub/ | 1.1k | — | ~3.9k | Automated safety check: Pass | AGPL-3.0 | 9 days ago |
| 2374 | Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package. | aipoch/ | 1.9k | 1 repo | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 2375 | Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for… | aipoch/ | 1.9k | 1 repo | ~2.9k | Automated safety check: Pass | MIT | 24 days ago |
| 2376 | Conducts multi-turn iterative deep research on specific topics within a codebase with zero tolerance for shallow analysis. | microsoft/ | 3.1k | 1 repo | ~1.1k | Automated safety check: Pass | MIT | yesterday |
| 2377 | A skill your agent uses to interpret a clinical trial, assess a readout, reconcile a registry with a publication or press release, examine endpoints, multiplicity, missing data, safety or… | hh-health-AI/ | 101 | — | ~902 | Automated safety check: Pass | MIT | 3 days ago |
| 2378 | 2378.Peek Quick memory lookup — search MemMesh and show compact one-liner results, or fetch one memory by id. | ThinkfleetAI/ | 420 | — | ~234 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 2379 | Full statistical audit of experiment results. An agent skill from appleweiping/WEIPING_WIKI. | appleweiping/ | 119 | — | ~2.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 2380 | 2380.Verify Artifact Prove that the file you are about to send, publish, or hand off IS the thing you mean — before it leaves your hands. | pedrohcgs/ | 1.7k | — | ~1.2k | Automated safety check: Notes | MIT | 13 days ago |
| 2381 | Agent-callable Perplexity tools — ask web-grounded questions with citations, run and poll deep research, list models, and search the web. | zapier/ | 177 | — | ~3k | Automated safety check: Pass | Elastic-2.0 | 1 mo ago |
| 2382 | 2382.Paper Writing Workflow 3: Full paper writing pipeline that goes from a narrative report to a polished, submission-ready PDF. | wanshuiyin/ | 17k | 1 repo | ~13k | Automated safety check: Warn | MIT | 4 days ago |
| 2383 | 2383.Crossref Match a pasted list of academic references against the Crossref REST API and produce a four-column markdown table (original, matched, confidence, flags) with canonical APA citations and DOIs. | franklee16/ | 223 | — | ~3.6k | Automated safety check: Pass | No licence | 23 days ago |
| 2384 | 2384.Ma Topic Intake Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope. | htlin222/ | 139 | — | ~743 | Automated safety check: Pass | Unknown | 18 days ago |
| 2385 | Retrieve SMILES strings from PubChem database using compound names to obtain molecular structures from common chemical names. | InternScience/ | 170 | 1 repo | ~1.1k | Automated safety check: Pass | MIT | 4 mo ago |
| 2386 | Pipeline for ML/AI research papers — lit review to LaTeX submission | taracodlabs/ | 852 | — | ~1.2k | Automated safety check: Pass | Apache-2.0 | 27 days ago |
| 2387 | Guidelines for clinical decision support (CDS) documents: biomarker-stratified cohort analyses and GRADE-graded treatment reports. | jaechang-hits/ | 374 | 1 repo | ~3k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 2388 | Break down full ICML reviewer responses into structured rebuttal units. | runtsang/ | 218 | — | ~371 | Automated safety check: Pass | No licence | 6 mo ago |
| 2389 | Guides the user through an interactive conversation to define their research project, then generates researchbrief.json and tasks.json. | LigphiDonk/ | 739 | — | ~1.8k | Automated safety check: Pass | MIT | 5 mo ago |
| 2390 | 2390.Materials Materials Project lookup and structure analysis (pymatgen, ASE) | lamm-mit/ | 246 | — | ~444 | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 2391 | 2391.AI Research Writing A skill your agent uses when the user wants academic writing prompts, paper polishing workflows, translation/rewrite guidance, reviewer-style paper critique, experiment write-up help, title/caption… | Citrus-bit/ | 120 | — | ~886 | Automated safety check: Pass | MIT | 1 mo ago |
| 2392 | Dispute-issue identification means, after legal-element extraction, extracting the issues in dispute from the legal facts and further converting case relationships into questions of legal… | THUYRan/ | 874 | — | ~2.4k | Automated safety check: Pass | No licence | 1 mo ago |
| 2393 | Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening… | brycewang-stanford/ | 4.6k | — | ~2.5k | Automated safety check: Notes | Unknown | 6 days ago |
| 2394 | 2394.Agent Survey Corpus Download a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning. | WILLOSCAR/ | 513 | — | ~628 | Automated safety check: Pass | No licence | 6 days ago |
| 2395 | 2395.Citation Diversifier PRODUCES a citation-budget plan/report (output/CITATIONBUDGETREPORT.md); does NOT edit the draft. | WILLOSCAR/ | 513 | — | ~1.2k | Automated safety check: Pass | No licence | 6 days ago |
| 2396 | 2396.Citation Injector APPLIES/consumes a citation-diversifier budget report (output/CITATIONBUDGETREPORT.md) to inject in-scope citations into an existing draft (NO NEW FACTS), so the run passes the global… | WILLOSCAR/ | 513 | — | ~1.5k | Automated safety check: Pass | No licence | 6 days ago |
| 2397 | 2397.Citation Verifier Generate and verify BibTeX entries from paper notes, writing citations/ref.bib and citations/verified.jsonl. | WILLOSCAR/ | 513 | — | ~1.1k | Automated safety check: Pass | No licence | 6 days ago |
| 2398 | 2398.Draft Polisher Audit-style editing pass for output/DRAFT.md: remove template boilerplate, improve coherence, and enforce citation anchoring. | WILLOSCAR/ | 513 | — | ~2.8k | Automated safety check: Pass | No licence | 6 days ago |
| 2399 | 2399.Global Reviewer Global consistency review for survey drafts: terminology, cross-section coherence, and scope/citation hygiene. | WILLOSCAR/ | 513 | — | ~2.5k | Automated safety check: Pass | No licence | 6 days ago |
| 2400 | 2400.Paragraph Curator Deterministically compact final H3 bodies to the active delivery profile's paragraph budget without deleting prose or changing citation-block order. | WILLOSCAR/ | 513 | — | ~603 | Automated safety check: Pass | No licence | 6 days ago |