Research & Science · For researchers

Query metadata and download sequencing data from the European Nucleotide Archive (ENA) via the Portal and Browser APIs.

ClawBio/ClawBio

Query metadata and download data from the NCBI Gene Expression Omnibus (GEO).

ClawBio/ClawBio

Query metadata and download data from the PRIDE Archive, EMBL-EBI's proteomics identifications database, via the PRIDE Archive REST API v3.

ClawBio/ClawBio

Design and conduct action research and participatory studies

wentorai/research-plugins

Assess research idea novelty through systematic literature search.

lingzhi227/agent-research-skills

Revise papers based on reviewer feedback. An agent skill from lingzhi227/agent-research-skills.

lingzhi227/agent-research-skills

Write a specific section of an academic paper (Abstract, Introduction, Background, Related Work, Methods, Experiments, Results, Discussion/Conclusion) with section-specific guidance and two-pass…

lingzhi227/agent-research-skills

Write point-by-point rebuttals to reviewer comments. An agent skill from lingzhi227/agent-research-skills.

lingzhi227/agent-research-skills

Write Related Work sections that compare and contrast prior work with your approach.

lingzhi227/agent-research-skills

A skill your agent uses when the user asks about citation relationships, references, citing papers, shared references, bibliographic overlap, or graph-style paper connections.

ZimoLiao/scholaraio

Stage 2 of the spatial transcriptomics workflow — normalize 10x Visium data and cluster spatial spots.

QING1105/ezST

End-to-end R workflow to simulate individual patient data (IPD) for a registered clinical trial using a g-formula causal-DAG simulator.

RConsortium/pharma-skills

Expert guidance for selecting and parameterizing cognitive psychology experimental paradigms based on research questions

NeuroAIHub/BrainPilot

Decompose genetic effects into direct and indirect paths through mediating variables using the mediation R package.

aipoch/medical-research-skills

Detect and correct for horizontal pleiotropy in Mendelian randomization analyses using MR-PRESSO for outlier removal, MR-Egger regression for directional pleiotropy, and Steiger filtering for…

aipoch/medical-research-skills

Conducts multi-turn iterative deep research on specific topics within a codebase with zero tolerance for shallow analysis.

microsoft/skills

A skill your agent uses to interpret a clinical trial, assess a readout, reconcile a registry with a publication or press release, examine endpoints, multiplicity, missing data, safety or…

hh-health-AI/healthcare-equity

Quick memory lookup — search MemMesh and show compact one-liner results, or fetch one memory by id.

ThinkfleetAI/memmesh

Full statistical audit of experiment results. An agent skill from appleweiping/WEIPING_WIKI.

appleweiping/WEIPING_WIKI

Prove that the file you are about to send, publish, or hand off IS the thing you mean — before it leaves your hands.

pedrohcgs/claude-code-my-workflow

Agent-callable Perplexity tools — ask web-grounded questions with citations, run and poll deep research, list models, and search the web.

zapier/connectors

Workflow 3: Full paper writing pipeline that goes from a narrative report to a polished, submission-ready PDF.

wanshuiyin/Auto-claude-code-research-in-sleep

Match a pasted list of academic references against the Crossref REST API and produce a four-column markdown table (original, matched, confidence, flags) with canonical APA citations and DOIs.

franklee16/academic-research-skills

Intake a meta-analysis topic from TOPIC.txt, translate it into a PICO or PECO protocol, and define eligibility, outcomes, and search scope.

htlin222/meta-pipe

Retrieve SMILES strings from PubChem database using compound names to obtain molecular structures from common chemical names.

InternScience/scp

Pipeline for ML/AI research papers — lit review to LaTeX submission

taracodlabs/aiden

Guidelines for clinical decision support (CDS) documents: biomarker-stratified cohort analyses and GRADE-graded treatment reports.

jaechang-hits/SciAgent-Skills

Break down full ICML reviewer responses into structured rebuttal units.

runtsang/RebuttalStudio

Guides the user through an interactive conversation to define their research project, then generates researchbrief.json and tasks.json.

LigphiDonk/Oh-my--paper

Materials Project lookup and structure analysis (pymatgen, ASE)

lamm-mit/scienceclaw

Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening…

brycewang-stanford/Auto-Empirical-Research-Skills

Download a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning.

WILLOSCAR/research-units-pipeline-skills

PRODUCES a citation-budget plan/report (output/CITATIONBUDGETREPORT.md); does NOT edit the draft.

WILLOSCAR/research-units-pipeline-skills

APPLIES/consumes a citation-diversifier budget report (output/CITATIONBUDGETREPORT.md) to inject in-scope citations into an existing draft (NO NEW FACTS), so the run passes the global…

WILLOSCAR/research-units-pipeline-skills

Generate and verify BibTeX entries from paper notes, writing citations/ref.bib and citations/verified.jsonl.

WILLOSCAR/research-units-pipeline-skills

Audit-style editing pass for output/DRAFT.md: remove template boilerplate, improve coherence, and enforce citation anchoring.

WILLOSCAR/research-units-pipeline-skills

Global consistency review for survey drafts: terminology, cross-section coherence, and scope/citation hygiene.

WILLOSCAR/research-units-pipeline-skills

Deterministically compact final H3 bodies to the active delivery profile's paragraph budget without deleting prose or changing citation-block order.

WILLOSCAR/research-units-pipeline-skills

Audit/regression checks for the evidence-first survey pipeline: citation health, per-section coverage, placeholder leakage, and template repetition.

WILLOSCAR/research-units-pipeline-skills

Write output/DRAFT.md (or output/SNAPSHOT.md) from an approved outline and evidence packs, using only verified citation keys from citations/ref.bib.

WILLOSCAR/research-units-pipeline-skills

Normalize cross-skill JSONL interfaces (ids + titles + citation key formats) so downstream skills do not rely on best-effort joins.

WILLOSCAR/research-units-pipeline-skills

A skill your agent uses when a research-brief workspace has a small paper set plus outline and needs a compact reader-facing briefing instead of a full survey.

WILLOSCAR/research-units-pipeline-skills

De-slot and harmonize paper voice across sections/.md without changing meaning or citation keys.

WILLOSCAR/research-units-pipeline-skills

Fill outline/tablesindex.md from outline/tableschema.md + evidence packs (NO PROSE in cells; citation-backed rows).

WILLOSCAR/research-units-pipeline-skills

Define evidence-first table schemas for a survey: what each table must answer, row unit, columns, and which evidence-pack fields are required to fill it.

WILLOSCAR/research-units-pipeline-skills

Wisp-science's actual agent tool surface and runtime boundaries.

xuzhougeng/wisp-science

Compare candidate rsIDs against GWAS Catalog phenotype associations.

exon-research/genomi

Applies Judea Pearl's causal reasoning frameworks to distinguish correlation from causation, evaluate AI capabilities, and make counterfactual decisions.

K-Dense-AI/mimeo