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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 433 | Core Python library for astronomy/astrophysics: units with dimensional analysis, celestial coordinate transforms (ICRS/Galactic/AltAz/FK5), FITS I/O, tables (FITS/HDF5/VOTable/CSV), cosmology… | jaechang-hits/ | 374 | 1 repo | ~5.5k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 434 | Unified Python interface to 40+ bioinformatics web services: UniProt proteins, KEGG pathways, ChEMBL/ChEBI/PubChem, BLAST, cross-database ID mapping, GO annotations, PPI. | jaechang-hits/ | 374 | 1 repo | ~6.1k | Automated safety check: Pass | Unknown | 12 days ago |
| 435 | GSEA and over-representation analysis (ORA) for RNA-seq and proteomics. | jaechang-hits/ | 374 | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 12 days ago |
| 436 | WSI processing for digital pathology. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.8k | Automated safety check: Notes | Apache-2.0 | 12 days ago |
| 437 | 437.Kegg Database KEGG REST API (academic only). An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~4.6k | Automated safety check: Pass | Unknown | 12 days ago |
| 438 | Aggregates QC from 150+ bioinformatics tools into one interactive HTML report. | jaechang-hits/ | 374 | 1 repo | ~2.9k | Automated safety check: Pass | GPL-3.0 | 12 days ago |
| 439 | Interactive viewer for microscopy. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~3.3k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 440 | Pure Python DICOM for medical imaging (CT, MRI, X-ray, ultrasound). | jaechang-hits/ | 374 | 1 repo | ~7.5k | Automated safety check: Pass | MIT | 12 days ago |
| 441 | 441.Pylabrobot Hardware-agnostic Python liquid-handler library: portable scripts run on Hamilton STAR, Tecan Freedom EVO, Opentrons OT-2, or a simulator without vendor lock-in. | jaechang-hits/ | 374 | 1 repo | ~4k | Automated safety check: Pass | MIT | 12 days ago |
| 442 | 442.Pymoo Python framework for single- and multi-objective optimization with evolutionary algorithms. | jaechang-hits/ | 374 | 1 repo | ~4.9k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 443 | CLI toolkit for SAM/BAM/CRAM: sort, index, convert, filter, QC alignments. | jaechang-hits/ | 374 | 1 repo | ~4.1k | Automated safety check: Pass | MIT | 12 days ago |
| 444 | Python image processing for microscopy and bioimage analysis. | jaechang-hits/ | 374 | 1 repo | ~4.4k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 445 | Process-based discrete-event simulation. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
| 446 | This skill should be used when extracting structured data from scientific PDFs for systematic reviews, meta-analyses, or database creation. | aiskillstore/ | 433 | — | ~2.2k | Automated safety check: Pass | No licence | yesterday |
| 447 | EndNote reference formatting workflow — converts [PMID: xxxx] markers in Markdown manuscripts to Word (.docx) using EndNote CWYW-recognized {Author, Year, Title} placeholders, while generating .ris… | aipoch/ | 1.9k | — | ~1.5k | Automated safety check: Pass | MIT | 24 days ago |
| 448 | Generate meta-analysis forest plots for binary classification data. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 449 | 449.Pydicom A Python library for working with DICOM (Digital Imaging and Communications in Medicine) files. | aipoch/ | 1.9k | — | ~4.4k | Automated safety check: Pass | MIT | 24 days ago |
| 450 | 450.Analyze End-to-end data analysis dispatching Coder and Data-engineer for implementation, coder-critic for review. | brycewang-stanford/ | 4.6k | — | ~2.2k | Automated safety check: Notes | Unknown | 5 days ago |
| 451 | 451.Data Cleaning Clean and transform messy data for analysis in Python, R, or Stata | brycewang-stanford/ | 4.6k | — | ~2.9k | Automated safety check: Pass | Unknown | 5 days ago |
| 452 | 452.Lifelines Complete survival analysis library in Python. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. | brycewang-stanford/ | 4.6k | — | ~771 | Automated safety check: Pass | MIT | 5 days ago |
| 453 | Project directory organization and script naming conventions for research | brycewang-stanford/ | 4.6k | — | ~2.1k | Automated safety check: Pass | Unknown | 5 days ago |
| 454 | 454.Multiome Scatac Workflow for paired or integrated single-cell RNA and ATAC analysis with multimodal latent spaces and regulatory interpretation. | BioTender-max/ | 200 | 1 repo | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 455 | 455.Ds Baseline A skill your agent uses when a quest needs to attach, import, reproduce, repair, verify, compare, or publish a baseline and its metrics. | OpenLAIR/ | 1.2k | — | ~6.9k | Automated safety check: Pass | MIT | 23 days ago |
| 456 | 456.Rdkit Use RDKit for molecular conformer generation, SMILES/InChI handling, molecular descriptors, fingerprints, and substructure searching. | Hello-QM/ | 205 | — | ~1.1k | Automated safety check: Pass | AGPL-3.0 | 19 days ago |
| 457 | DNAnexus cloud genomics platform. An agent skill from aipoch/medical-research-skills. | aipoch/ | 1.9k | — | ~3.5k | Automated safety check: Pass | MIT | 24 days ago |
| 458 | 458.Arxiv CLI Tools Command-line tools for searching and batch-downloading arXiv papers | wentorai/ | 298 | 1 repo | ~1.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 459 | Learn causal inference with Python using the Brave and True handbook | wentorai/ | 298 | 1 repo | ~1.7k | Automated safety check: Pass | MIT | 3 mo ago |
| 460 | Reproducible Python environments, notebooks, and literate programming | wentorai/ | 298 | 1 repo | ~2.2k | Automated safety check: Pass | MIT | 3 mo ago |
| 461 | Automate repetitive research tasks with pipelines, schedulers, and scripting | wentorai/ | 298 | 1 repo | ~1.9k | Automated safety check: Pass | MIT | 3 mo ago |
| 462 | Detect somatic CNVs from WES/WGS/targeted BAMs (CNVkit v0.9.x). | jaechang-hits/ | 374 | 1 repo | ~5.9k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 463 | Bulk RNA-seq DE with R/Bioconductor DESeq2. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~6.4k | Automated safety check: Pass | LGPL-3.0 | 12 days ago |
| 464 | 464.Ena Database ENA REST API for sequences, reads, assemblies, and annotations. | jaechang-hits/ | 374 | 1 repo | ~5.3k | Automated safety check: Pass | Unknown | 12 days ago |
| 465 | MaxQuant + Perseus proteomics pipeline: run MaxQuant for LFQ and SILAC; parse proteinGroups.txt in Python; filter contaminants/decoys; log2 + median-normalize; impute MNAR; t-test with FDR; volcano… | jaechang-hits/ | 374 | 1 repo | ~7.2k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 466 | Python bridge to ImageJ2/Fiji for macros, plugins (Bio-Formats, TrackMate, Analyze Particles), NumPy↔ImagePlus/ImgLib2 exchange, and ImageJ Ops. | jaechang-hits/ | 374 | 1 repo | ~6.2k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 467 | Read/write SAM/BAM/CRAM, VCF/BCF, FASTA/FASTQ. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.2k | Automated safety check: Pass | MIT | 12 days ago |
| 468 | Query Reactome pathways via REST: pathway queries, entity lookup, keyword search, gene list enrichment, hierarchy, cross-refs. | jaechang-hits/ | 374 | 1 repo | ~5.2k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 469 | Annotate and filter VCF variants with SnpEff and SnpSift. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | 1 repo | ~5.4k | Automated safety check: Pass | MIT | 12 days ago |
| 470 | Unified Python framework for extracellular electrophysiology. | jaechang-hits/ | 374 | 1 repo | ~7.8k | Automated safety check: Pass | MIT | 12 days ago |
| 471 | Python API v2 for Opentrons OT-2/Flex liquid handlers: protocols as Python files with metadata and run(); control pipettes, labware, and modules (thermocycler, heater-shaker, magnetic, temperature). | jaechang-hits/ | 374 | 1 repo | ~7.7k | Automated safety check: Pass | Apache-2.0 | 12 days ago |
| 472 | Use this Chemprop sub-skill for reaction SMILES, reaction-plus-molecule multicomponent data, atom/bond targets, constrained MolAtomBond prediction, spectral tasks, and specialized descriptor/feature… | VectorSpaceLab/ | 331 | — | ~1.2k | Automated safety check: Pass | Unknown | 1 mo ago |
| 473 | 经济金融研究端到端完整流程。从研究想法到可投稿论文，覆盖文献综述、想法生成、新颖性验证、实证方法设计、论文大纲、正文写作、图表生成、LaTeX编译和投稿前检查。 | csmar432/ | 109 | — | ~5.1k | Automated safety check: Pass | MIT | 5 days ago |
| 474 | Standardized Python & Stata coding practices for empirical research projects | brycewang-stanford/ | 4.6k | — | ~5.6k | Automated safety check: Pass | Unknown | 5 days ago |
| 475 | 12 econometrics skills. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. | brycewang-stanford/ | 4.6k | — | ~482 | Automated safety check: Pass | Unknown | 5 days ago |
| 476 | AiZynthFinder retrosynthetic route planning (CASP) from AstraZeneca Molecular AI. | jaechang-hits/ | 374 | — | ~5k | Automated safety check: Pass | MIT | 12 days ago |
| 477 | 477.Gtars Rust-backed Python library for fast genomic token arithmetic and BED processing. | jaechang-hits/ | 374 | — | ~4.2k | Automated safety check: Pass | MIT | 12 days ago |
| 478 | 478.Geniml Python library for genomic interval ML. An agent skill from jaechang-hits/SciAgent-Skills. | jaechang-hits/ | 374 | — | ~4.3k | Automated safety check: Pass | BSD-2-Clause | 12 days ago |
| 479 | Save MultiAssayExperiments to h5mu files supported by muon and mudata. | bioMate-AI/ | 804 | — | ~1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 480 | SpatialDE is a method to find spatially variable genes (SVG) from spatial transcriptomics data. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
