Development · Bioinformatics

jujutsu (jj) command cheatsheet for this colocated jj+git Bioconductor repo.

seandavi/GEOquery

Write, edit, or review gbdraw pull request titles and maintainer-facing descriptions.

satoshikawato/gbdraw

7-section readiness scorecard for a LOCAL repo. An agent skill from ruvnet/metaharness.

ruvnet/metaharness

Run @metaharness/darwin evolve {repo} to mutate a harness's seven policy surfaces (planner/contextBuilder/reviewer/retryPolicy/toolPolicy/memoryPolicy/scorePolicy), sandbox-score each variant, and…

ruvnet/ruflo

Run a GEPA learning cycle via metaharness learn (upstream ADR-235, metaharness@0.3.0) — optimizes a harness genome against a SWE-bench-style slice manifest.

ruvnet/ruflo

ADR-152 — weighted similarity between two harness fingerprints (genome + score JSON).

ruvnet/ruflo

Create and manipulate Seq, MutableSeq, and SeqRecord objects using Biopython.

GPTomics/bioSkills

Authors bioinformatics pipelines in WDL (Workflow Description Language) run by Cromwell or miniwdl, targeting the GATK/Broad and Terra/AnVIL/BioData Catalyst cloud ecosystem, with tasks, workflows…

GPTomics/bioSkills

Orders and orients assembled contigs into chromosome-scale scaffolds from long-range linking data, inserting N-gap spacers (adds no sequence).

GPTomics/bioSkills