Search
Data & Analytics · For researchers
Skills
Sort:BestMost starsTrending todayTrending this weekTrending this monthNewestRecently updatedName
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 145 | A skill your agent uses when performing sample-level dimensionality reduction and visualization on abundance or OTU-style matrices with a companion group file, generating UMAP and/or t-SNE… | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 24 days ago |
| 146 | A skill your agent uses when identifying collaboration opportunities across fields, finding experts in complementary disciplines, translating methodologies between scientific domains, or building… | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 147 | A skill your agent uses when interpreting scientific graphs and charts, explaining data visualizations for research presentations, writing figure captions for publications, or analyzing trends in… | aipoch/ | 1.9k | — | ~3.4k | Automated safety check: Pass | MIT | 24 days ago |
| 148 | Handles BED-format genomic intervals (BED3 through BED12, narrowPeak/broadPeak) and the coordinate-system substrate the whole interval category rests on, with bedtools (CLI) and… | GPTomics/ | 1.2k | 1 repo | ~4.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 149 | Load and preprocess imaging mass cytometry (IMC) and MIBI data from raw MCD/TXT through hot-pixel removal, spillover compensation, and variance-stabilizing transformation, covering readimc/steinbock… | GPTomics/ | 1.2k | 1 repo | ~4.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 150 | Compare cell-type composition and spatial features across conditions in IMC/MIBI cohorts with the patient as the experimental unit, covering pseudoreplication, per-patient aggregation, mixed models… | GPTomics/ | 1.2k | 1 repo | ~3.5k | Automated safety check: Pass | MIT | 1 mo ago |
| 151 | Designs and analyzes stable-isotope-resolved metabolomics (SIRM / isotope tracing / fluxomics) experiments that measure metabolic ACTIVITY via 13C/15N/2H tracers, distinct from steady-state pool… | GPTomics/ | 1.2k | 1 repo | ~3.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 152 | Computes linkage disequilibrium (r2, D', composite Rogers-Huff r2), prunes correlated variants, clumps GWAS summary statistics to lead SNPs, and defines haplotype blocks with PLINK 1.9/2.0 and… | GPTomics/ | 1.2k | 1 repo | ~4.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 153 | Builds and manages DIA spectral libraries as peptide query parameters (precursor m/z, a few fragment m/z plus relative intensities, normalized RT, optional CCS), covering experimental DDA… | GPTomics/ | 1.2k | 1 repo | ~4.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 154 | Build restriction maps showing enzyme cut positions and inter-site distances along DNA using Biopython Bio.Restriction. | GPTomics/ | 1.2k | 1 repo | ~2.3k | Automated safety check: Pass | MIT | 1 mo ago |
| 155 | Quality control and exploration of RNA-seq count matrices before differential expression. | GPTomics/ | 1.2k | 1 repo | ~2.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 156 | Tests whether a proposed or predicted RNA secondary structure is supported by evolutionary covariation using R-scape, which scores compensatory substitutions against a phylogeny-aware null and… | GPTomics/ | 1.2k | 1 repo | ~2.7k | Automated safety check: Pass | MIT | 1 mo ago |
| 157 | Build the spatial neighbor graph that every downstream spatial statistic (Moran's I, neighborhood enrichment, co-occurrence, spatial domains) inherits, using Squidpy. | GPTomics/ | 1.2k | 1 repo | ~4.2k | Automated safety check: Pass | MIT | 1 mo ago |
| 158 | Infers directed, time-delayed gene regulatory edges from BULK time-series expression using Granger causality (statsmodels VAR F-test), dynGENIE3 (tree ensembles regressing ODE-derived derivatives… | GPTomics/ | 1.2k | 1 repo | ~5k | Automated safety check: Pass | MIT | 1 mo ago |
| 159 | Filters germline and somatic variant callsets at the site and genotype level with GATK VQSR (VQSLOD, truth-sensitivity tranches), VETS/ScoreVariantAnnotations, NVScoreVariants, hard filters with… | GPTomics/ | 1.2k | 1 repo | ~5.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 160 | Orchestrates imaging mass cytometry from raw MCD acquisitions to patient-level spatial analysis, chaining steinbock preprocessing, Mesmer/Cellpose segmentation, single-cell quantification… | GPTomics/ | 1.2k | 1 repo | ~4.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 161 | Consensus cell type annotation: runs 10+ algorithms (KNN-Harmony/BBKNN/Scanorama/scVI, CellTypist, ONCLASS, Random Forest, SCANVI, SVM, XGBoost) on a labeled reference and transfers labels via… | jaechang-hits/ | 374 | 2 repos | ~6.9k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
| 162 | 162.Causal Inference Production-grade Bayesian causal inference with PyMC, CausalPy, and DoWhy. | brycewang-stanford/ | 4.6k | — | ~2k | Automated safety check: Pass | MIT | 6 days ago |
| 163 | 163.Ols Regression Econometrics skill for OLS regression and linear models. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. | brycewang-stanford/ | 4.6k | — | ~1.2k | Automated safety check: Pass | Unknown | 6 days ago |
| 164 | This skill covers publication-quality tables and figures for academic research papers. | brycewang-stanford/ | 4.6k | — | ~2k | Automated safety check: Pass | Unknown | 6 days ago |
| 165 | 165.Cf Crawl Crawl entire websites using Cloudflare Browser Rendering /crawl API. | davila7/ | 33k | — | ~2.6k | Automated safety check: Notes | MIT | yesterday |
| 166 | Bulk RNA-seq DE with PyDESeq2: load counts, normalize, fit negative binomial models, Wald test (BH-FDR), LFC shrinkage, volcano/MA plots. | jaechang-hits/ | 374 | 1 repo | ~3.8k | Automated safety check: Pass | CC-BY-4.0 | 12 days ago |
| 167 | 167.Molfeat Molecular ML featurization library (100+ featurizers: ECFP, descriptors, ChemBERTa). | lamm-mit/ | 246 | — | ~4.2k | Automated safety check: Pass | Apache-2.0 | 1 mo ago |
| 168 | 168.Gene Info Retrieves comprehensive gene information including PubMed publication counts, NCBI summaries, and Ensembl transcript data. | aipoch/ | 1.9k | — | ~2.3k | Automated safety check: Pass | MIT | 24 days ago |
| 169 | Generates PI(E)COS structure (Population, Intervention, Comparator, Outcomes, Study Design) from Meta-analysis or study titles. | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 170 | Applies ACMG/AMP 2015 framework with ClinGen SVI specifications, Tavtigian 2018/2020 Bayesian point system, Abou Tayoun 2018 PVS1 decision tree, Pejaver 2022 and Bergquist 2025 calibrated PP3/BP4… | GPTomics/ | 1.2k | 1 repo | ~7k | Automated safety check: Pass | MIT | 1 mo ago |
| 171 | Analyzes time-series and longitudinal RNA-seq for differential expression and trajectory structure. | GPTomics/ | 1.2k | 1 repo | ~5.6k | Automated safety check: Pass | MIT | 1 mo ago |
| 172 | Visualises RNA-modification data with transcript-feature metagene plots (Guitar GuitarPlot; MetaPlotR; deepTools computeMatrix scale-regions), peak-centred heatmaps (ComplexHeatmap; deepTools… | GPTomics/ | 1.2k | 1 repo | ~8.1k | Automated safety check: Pass | MIT | 1 mo ago |
| 173 | Extracts per-cytosine methylation calls from aligned bisulfite/EM-seq reads with bismarkmethylationextractor (Bismark BAM) or the aligner-agnostic MethylDackel/BISCUIT (bwa-meth BAM), producing the… | GPTomics/ | 1.2k | 1 repo | ~5.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 174 | Frames Bayesian phylogenetics as approximating a posterior distribution over trees conditioned on data AND priors via an MCMC that must be proven to have converged, using MrBayes, BEAST2, RevBayes… | GPTomics/ | 1.2k | 1 repo | ~6.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 175 | End-to-end bulk time-course analysis from an expression matrix to temporal gene modules and per-cluster pathway enrichment. | GPTomics/ | 1.2k | 1 repo | ~6k | Automated safety check: Pass | MIT | 1 mo ago |
| 176 | 176.Bulkrna Splicing Load when summarising rMATS / SUPPA2 alternative-splicing output and identifying significant differential splicing events. | TianGzlab/ | 161 | — | ~822 | Automated safety check: Pass | Apache-2.0 | 4 days ago |
| 177 | 177.Data Deposit Prepare a replication package for the sewage-house-prices project. | brycewang-stanford/ | 4.6k | — | ~1.2k | Automated safety check: Notes | Unknown | 6 days ago |
| 178 | Julia-based econometric and structural estimation for computationally intensive tasks. | brycewang-stanford/ | 4.6k | — | ~1.4k | Automated safety check: Pass | Unknown | 6 days ago |
| 179 | 179.G1 VS-Enhanced Journal Matcher with Journal Intelligence MCP — Real-time journal data pipeline with checkpoint-based human decisions. | brycewang-stanford/ | 4.6k | — | ~3.7k | Automated safety check: Pass | Unknown | 6 days ago |
| 180 | Stata-to-Python translation for data analysis. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. | brycewang-stanford/ | 4.6k | — | ~6.2k | Automated safety check: Pass | Unknown | 6 days ago |
| 181 | This skill should be used when the user requests to research topics using FireCrawl, enrich notes with web sources, search and scrape information, or write scientific/academic papers. | glebis/ | 391 | — | ~2.2k | Automated safety check: Notes | MIT | 3 days ago |
| 182 | 182.Anndata Data structure for annotated matrices in single-cell analysis; use when reading/writing .h5ad (or zarr) and exchanging data with the scverse ecosystem. | aipoch/ | 1.9k | — | ~1.7k | Automated safety check: Pass | MIT | 24 days ago |
| 183 | Sequence alignment and alignment file processing with Biopython (Bio.Align/Bio.AlignIO), triggered when you need global/local pairwise alignment, MSA read/write/format conversion, or alignment… | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Pass | MIT | 24 days ago |
| 184 | Use Biopython to read/write/convert biological sequence files (FASTA/GenBank/FASTQ, etc.) and perform basic sequence operations; use when you need reliable sequence I/O, lightweight sequence… | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
| 185 | Generates complete dual-disease transcriptomic + machine learning research designs from a user-provided disease pair. | aipoch/ | 1.9k | — | ~3.7k | Automated safety check: Pass | MIT | 24 days ago |
| 186 | A real-time monitoring system for identifying "incubation period" research hotspots in biological and medical sciences before they are defined by mainstream journals. | aipoch/ | 1.9k | — | ~3.5k | Automated safety check: Pass | MIT | 24 days ago |
| 187 | 187.Geniml Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak universes, or run… | aipoch/ | 1.9k | — | ~1.9k | Automated safety check: Pass | MIT | 24 days ago |
| 188 | 188.Hypogenic Automated LLM-driven hypothesis generation and testing for tabular datasets; use when you need systematic exploration of empirical patterns (e.g., fraud detection, content analysis) and want to… | aipoch/ | 1.9k | — | ~1.6k | Automated safety check: Pass | MIT | 24 days ago |
| 189 | 189.Smiles De Salter Analyze data with smiles-de-salter using a reproducible workflow, explicit validation, and structured outputs for review-ready interpretation. | aipoch/ | 1.9k | — | ~2.6k | Automated safety check: Pass | MIT | 24 days ago |
| 190 | Generates complete two-sample Mendelian randomization (MR) research designs from a user-provided research direction. | aipoch/ | 1.9k | — | ~2.7k | Automated safety check: Pass | MIT | 24 days ago |
| 191 | Anti-SEO deep consumer research tool. An agent skill from LeoYeAI/openclaw-master-skills. | LeoYeAI/ | 2.2k | — | ~5.9k | Automated safety check: Pass | MIT | 2 mo ago |
| 192 | GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). | jaechang-hits/ | 374 | 2 repos | ~5.3k | Automated safety check: Pass | BSD-3-Clause | 12 days ago |
