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Data & Analytics · By bioMate-AI
Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | In recent years a wealth of biological data has become available in public data repositories. | bioMate-AI/ | 804 | — | ~4.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 2 | ChIPseeker is a Bioconductor package for annotating ChIP-seq data analysis. | bioMate-AI/ | 804 | — | ~3.8k | Automated safety check: Pass | Unknown | 3 mo ago |
| 3 | The creation of effective visualizations is a fundamental component of data analysis. | bioMate-AI/ | 804 | — | ~1.7k | Automated safety check: Pass | Unknown | 3 mo ago |
| 4 | An implementation, which takes input data and makes it available for proper batch effect removal by ComBat or Limma. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 5 | Systematic 3D interaction calls and differential analysis for Hi-C and HiChIP. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 6 | Data quality assessment is an integral part of preparatory data analysis to ensure sound biological information retrieval. | bioMate-AI/ | 804 | — | ~1.1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 7 | Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. | bioMate-AI/ | 804 | — | ~936 | Automated safety check: Pass | Unknown | 3 mo ago |
| 8 | Save MultiAssayExperiments to h5mu files supported by muon and mudata. | bioMate-AI/ | 804 | — | ~1k | Automated safety check: Pass | Unknown | 3 mo ago |
| 9 | NanoTube includes functions for the processing, quality control, analysis, and visualization of NanoString nCounter data. | bioMate-AI/ | 804 | — | ~966 | Automated safety check: Pass | Unknown | 3 mo ago |
| 10 | The ORFhunteR package is a R and C++ library for an automatic determination and annotation of open reading frames (ORF) in a large set of RNA molecules. | bioMate-AI/ | 804 | — | ~1.9k | Automated safety check: Pass | Unknown | 3 mo ago |
| 11 | This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and… | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 12 | The package comprises a set of pretrained machine learning models to predict basic immune cell types. | bioMate-AI/ | 804 | — | ~1.3k | Automated safety check: Pass | Unknown | 3 mo ago |
| 13 | A post hoc cell type classification tool to fine-tune cell type annotations generated by any cell type classification procedure with semi-supervised learning algorithm AdaSampling technique. | bioMate-AI/ | 804 | — | ~818 | Automated safety check: Pass | Unknown | 3 mo ago |
| 14 | sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. | bioMate-AI/ | 804 | — | ~1.2k | Automated safety check: Pass | Unknown | 3 mo ago |
| 15 | A first step in the data analysis of Mass Spectrometry (MS) based proteomics data is to identify peptides and proteins. | bioMate-AI/ | 804 | — | ~1.5k | Automated safety check: Pass | Unknown | 3 mo ago |
| 16 | This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. | bioMate-AI/ | 804 | — | ~1.8k | Automated safety check: Pass | Unknown | 3 mo ago |
