Repository
NygenAnalytics/scarf agent skills
- skill
- 1
- GitHub stars
- 126
GitHub description: “Memory-efficient single-cell analysis in Python. Stream RNA, ATAC, CITE-seq and multi-omics from local or remote Zarr stores, from laptop to atlas scale, with reusable fingerprinted results.”
- Stars
- 126 (18 forks)
- Licence
- BSD-3-Clause
- Last push
- Oct 2026
- Created
- May 2020
- Homepage
- scarf.readthedocs.io
- object-storage
- provenance-tracking
- scalable-computing
- scrna-seq-analysis
- single-cell
- single-cell-multiomics
- single-cell-omics
Install all skills
npx skills add NygenAnalytics/scarfAdd --skill <name> for a single skill and -a <agent> to choose the agent (see the agent guides).
Skills in NygenAnalytics/scarf, ranked
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Analyze single-cell data with core Scarf, the out-of-core Zarr DataStore library with immutable artifacts and pipeline runs. | NygenAnalytics/ | 126 | — | ~4.7k | Automated safety check: Pass | BSD-3-Clause | yesterday |
Questions, answered from the data.
What is the best skill in NygenAnalytics/scarf?
Scarf Single Cell from NygenAnalytics/scarf ranks first of the 1 skills in NygenAnalytics/scarf listed here, with the highest score: its repository has 126 GitHub stars, its SKILL.md loads about 4.7k tokens and it passes the automated safety check with no findings.
Are the skills in NygenAnalytics/scarf official?
None yet. All 1 skills in NygenAnalytics/scarf listed here come from community repositories; a skill counts as official when the product's own GitHub organization publishes it.
How do I install all skills from NygenAnalytics/scarf?
Run npx skills add NygenAnalytics/scarf in your project: the open-source skills CLI installs the repository's skills into your coding agent's skills folder. To install a single skill, open its page here for the exact command.
How are these skills ranked?
By Skill Navigator score, which combines the GitHub stars of the skill's repository (shared across that repo's skills and discounted for large collections), how many other GitHub owners carry a copy of the skill, and automated SKILL.md quality checks, minus penalties for safety-check warnings and for each further skill from the same repository. Skills that fail the safety check are not listed.