Python agent skills, page 68

Performs gene-level association from GWAS summary statistics via genetically predicted tissue expression using FUSION, PrediXcan, S-PrediXcan, S-MultiXcan, UTMOST, MOSTWAS, kTWAS, EpiXcan, TIGAR-V2…

GPTomics/bioSkills

Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML.

GPTomics/bioSkills

Resolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations using the dbSNP Build 156 JSON architecture.

GPTomics/bioSkills

Queries gnomAD v4 (807k samples), v3, v2.1.1, and constraint metrics with grpmax FAF95, bottleneck-group exclusion, LOEUF interpretation, SV/CNV/mtDNA catalogs, and Whiffin max-credible-AF framework.

GPTomics/bioSkills

Extracts and assigns COSMIC v3.4 mutational signatures (86 SBS / 11 DBS / 18 ID / 21 CN / 16 SV) from somatic VCFs using SigProfilerSuite, MutationalPatterns, MuSiCal mvNMF, SigNet, or HRDetect.

GPTomics/bioSkills

Prioritizes rare-disease variants from trio/quad WES/WGS with de novo (DeNovoGear, Triodenovo), compound-heterozygous phasing (WhatsHap), mosaic VAF tiering, phenotype-driven ranking (Exomiser…

GPTomics/bioSkills

Detect horizontal gene transfer (HGT / LGT) using compositional methods (GC%, codon usage, tetranucleotide z-scores via SIGI-HMM, AlienHunter, IslandViewer 4, IslandPath-DIMOB)…

GPTomics/bioSkills

Detect syntenic blocks and structural rearrangements between genomes using MCScanX (Wang 2012), JCVI/MCScan (Tang 2008 Python), GENESPACE (Lovell 2022) for orthology-anchored riparian visualization…

GPTomics/bioSkills

Designs pooled sgRNA libraries for CRISPR knockout, interference (CRISPRi), activation (CRISPRa), Cas12a multiplex, base-editor, and prime-editor screens.

GPTomics/bioSkills

在线代码执行能力。当用户要求运行代码片段、验证算法、测试函数输出、 或想看某段代码的执行结果时使用。支持 Python、JavaScript、TypeScript、 Go、Rust、Java、C/C++、Ruby、PHP 等语言。即使用户只是说「帮我跑一下这段代码」 或贴了一段代码想看结果，也应触发。

zhinjs/zhin

Configures and runs LLM evaluation using Promptfoo framework.

daymade/claude-code-skills

uv workflows for Python — dependencies, virtualenvs, PEP 723 scripts, Python version management, CI, and Docker.

harperreed/dotfiles

Build and deploy AI agents with CloudBase Agent SDK (TypeScript & Python).

TencentCloudBase/CloudBase-AI-Toolkit

Apply ok-end-field repository rules for tests, commits, PRs, secrets, PowerShell text handling, and broad source edits.

AliceJump/ok-end-field

Pydantic Models workflow skill. An agent skill from diegosouzapw/awesome-omni-skills.

diegosouzapw/awesome-omni-skills

Web data extraction and discovery using the Bright Data Python SDK.

brightdata/skills

Python data pipelines with modular architecture. An agent skill from jamditis/claude-skills-journalism.

jamditis/claude-skills-journalism

Runs Ruff linting and formatting on Python files. An agent skill from rhesis-ai/rhesis.

rhesis-ai/rhesis

Protein structure prediction with Boltz-2 (default) or OpenFold3.

ClawBio/ClawBio

Eval-driven skill tuning. An agent skill from ClawBio/ClawBio.

ClawBio/ClawBio

Common AWS CDK patterns and constructs for building cloud infrastructure with TypeScript, Python, or Java.

aiskillstore/marketplace

Search code by AST structure using ast-grep. An agent skill from aiskillstore/marketplace.

aiskillstore/marketplace

UTILITY SKILL — Reusable Azure Terraform patterns: hub-spoke, private endpoints, diagnostics, AVM-TF modules.

jonathan-vella/apex

Submit→waitfornotification→harvest workflow for the user's SSH/SLURM hosts.

JimLiu/science-skills

End-to-end runbook for adding or modifying a Flowfile node type across all four layers (flowfilecore settings/graph/template, flowfilefrontend UI registry, flowfileframe Python API, flowfilewasm…

Edwardvaneechoud/Flowfile

Deploy Runtime Application Self-Protection (RASP) agents to detect and block attacks from within application runtime, covering OpenRASP integration, attack pattern detection, and security policy…

mukul975/Anthropic-Cybersecurity-Skills

End-to-end R workflow to simulate individual patient data (IPD) for a registered clinical trial using a g-formula causal-DAG simulator.

RConsortium/pharma-skills

Use as a terminal node that emits accepted@1 only when an upstream verdict@1 says pass, and fails loudly on a rejected draft regardless of how routing reached it.

s0912758806p/agentic-sop-to-work

A skill your agent uses when adding cross-cutting concerns to durable functions — structured logging or tracing across all functions, error tracking with Sentry, payload encryption for sensitive…

Asymmetric-al/core

Runs a multi-step procedure as a Python DAG, so ordering, branching and retries are enforced by the runner rather than described in prose a model can generate past.

oaustegard/claude-skills

Extract leads from conferences, meetups, hackathons, and podcasts by analyzing speaker lists, sponsor lists, hackathon entries, and podcast guests.

gooseworks-ai/goose-skills

Generates Instagram-ready product reels from any e-commerce product page URL.

gooseworks-ai/goose-skills

Builds Agent2Agent (A2A) servers and clients, the open protocol (originally from Google, now under the Linux Foundation) that lets AI agents from different frameworks call each other.

TerminalSkills/skills

Stateful Jupyter kernel — variables persist across cells (hamelnb)

taracodlabs/aiden

Extract text from PDFs, images, scans, Word docs (Python). An agent skill from taracodlabs/aiden.

taracodlabs/aiden

当（when）变更新增或修改 migrations/ 下的路径时，审查 database migration 文件。合并前使用此 migration Skill 收集正向、回滚、锁定和数据安全证据。

fancyboi999/ai-engineering-from-scratch-zh

This skill helps with GitHub Copilot SDK work across Node.js/TypeScript, Python, Go, .NET, and Java.

intellectronica/agent-skills

Recommend AND run open-source AI tools, agents, Claude Code / Codex skills, and MCP servers for any stage of a literature review — searching, reading, extracting, synthesizing, screening…

brycewang-stanford/Auto-Empirical-Research-Skills

Download a small corpus of open-access arXiv survey/review PDFs about agentic systems and extract text for style learning.

WILLOSCAR/research-units-pipeline-skills

Rewrite outline/claimevidencematrix.md as a projection/index of evidence packs (NO PROSE), so claims/axes are driven by outline/evidencedrafts.jsonl rather than outline placeholders.

WILLOSCAR/research-units-pipeline-skills

Compile a LaTeX project and run basic QA (missing refs, bib errors, broken citations), producing latex/main.pdf and a build report.

WILLOSCAR/research-units-pipeline-skills

Identify survey/review papers in a retrieved set and extract taxonomy seeds into outline/taxonomy.yml (topics/subtopics/terminology).

WILLOSCAR/research-units-pipeline-skills

Drive the VibeSys terminal UI (TUI) headlessly via tmux against real Claude-Code-provider runs, to find and report display bugs, frontend/interaction glitches, backend/protocol problems, and…

uw-syfi/vibesys

Create, edit, analyze and visualize spreadsheets. An agent skill from AFK-surf/OpenBridge.

AFK-surf/OpenBridge

当需要通过串口与嵌入式设备建立交互式 Shell 会话、执行单条命令或批量脚本时使用. An agent skill from LeoKemp223/embed-ai-tool.

LeoKemp223/embed-ai-tool

Wisp-science's actual agent tool surface and runtime boundaries.

xuzhougeng/wisp-science

A skill your agent uses when installing, deploying, checking, or batch-updating Emerge runners from admin commands or cockpit operator workflows.

jianzhichun/emerge

多平台文案改写能力；当用户需要将文案改写为公众号/视频号/抖音/快手/哔站/小红书/知乎风格，或批量输出多平台改写结果时使用

redfox-data/redfox-community