Read arXiv Paper
karpathy/nanochat
Fetches the TeX source of an arXiv paper from its URL, reads it and writes a markdown summary tied to the nanochat project.
A skill your agent uses when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore…
$ npx skills add ZimoLiao/scholaraio --skill search -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ZimoLiao/scholaraio search --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/search .claude/skills/search && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .claude/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/searchType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ZimoLiao/scholaraio --skill search -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ZimoLiao/scholaraio search --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/search .agents/skills/search && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .agents/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ZimoLiao/scholaraio --skill search -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ZimoLiao/scholaraio search --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/search .cursor/skills/search && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .cursor/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ZimoLiao/scholaraio.git --path .claude/skills/search--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ZimoLiao/scholaraio --skill search -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ZimoLiao/scholaraio search --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/search .gemini/skills/search && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .gemini/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ZimoLiao/scholaraio searchInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ZimoLiao/scholaraio --skill search -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/search .github/skills/search && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .github/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ZimoLiao/scholaraio --skill search -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ZimoLiao/scholaraio search --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ZimoLiao/scholaraio.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/search .opencode/skills/search && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "search" agent skill from https://github.com/ZimoLiao/scholaraio/tree/main/.claude/skills/search into .opencode/skills/search/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "search", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
searchA skill your agent uses when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore…
Search is an agent skill from ZimoLiao/scholaraio. Use when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore databases, and arXiv.
Its SKILL.md is about 1.2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Academic paper search. It works with arXiv. The repository describes itself as: Scholar All-In-One: A research infrastructure for AI agents. The licence is MIT.
3 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 777628b. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are bash).
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Search loads about 1.2k tokens when it runs. Until then it costs about 51 tokens; SKILL.md has 292 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from ZimoLiao/scholaraio at commit 777628b, republished under its MIT licence (© ZimoLiao). 292 words, ~1,187 tokens.
.claude/skills/search/SKILL.md (or your agent's skills folder).在本地论文库中搜索文献。默认使用融合检索(关键词 + 语义向量合并排序),也支持单独使用某一种模式。
解析用户输入,判断搜索模式:
vsearchsearchsearch --chunk;若 chunk 索引尚未建立,先运行 index --chunkssearch-author/citations skillusearch(融合检索)——同时执行 FTS5 关键词搜索和 FAISS 语义搜索,合并去重排序。两路都命中的论文排名靠前。向量索引不可用时自动降级为纯关键词。fsearch从用户输入中提取:
--limit N;未指定则使用默认值--year 2023(单年)、--year 2020-2024(范围)、--year 2020-(起始年至今)--journal "Fluid Mechanics"(模糊匹配)--type review(模糊匹配,常见值:review、journal-article、book-chapter)查询词拆分原则:不要把“作者 + 年份 + 关键词/题名词”全部拼进同一个 query。这条规则同时适用于 search、vsearch 和 usearch:
search 会把整串文本交给 FTS5 MATCH;作者缩写、全名、标点或年份 token 只要和索引不一致,就可能让原本可命中的论文搜不出来。vsearch 通常不会因此空结果,但作者/年份/期刊等限定词会作为噪声进入 query embedding,可能拉低相关论文分数或引入相近但不精确的结果。usearch 同时跑 FTS 和向量;脏 query 可能让 FTS leg 失效,只剩语义命中,结果不再获得 both 加分。--year,不要放进 query。search-author "<作者姓或姓名>",不要把作者混进主题 query。执行搜索命令:
融合检索(默认):
scholaraio usearch "<查询词>" --limit <N> [--year <Y>] [--journal <J>] [--type <T>]关键词搜索:
scholaraio search "<查询词>" --limit <N> [--year <Y>] [--journal <J>] [--type <T>]证据片段搜索(返回 paper、section、line range、snippet):
scholaraio search --chunk "<查询词>" --limit <N> [--year <Y>] [--journal <J>] [--type <T>]语义搜索:
scholaraio vsearch "<查询词>" --limit <N> [--year <Y>] [--journal <J>] [--type <T>]作者搜索:
scholaraio search-author "<作者名>" --limit <N> [--year <Y>] [--journal <J>] [--type <T>]引用量排序:使用
/citationsskill 中的scholaraio top-cited命令。
联邦搜索(跨库 + arXiv):
# 同时搜主库和 arXiv
scholaraio fsearch "<查询词>" --scope main,arxiv --limit <N>
# 同时搜主库和 proceedings
scholaraio fsearch "<查询词>" --scope main,proceedings
# 同时搜主库和所有 explore 库
scholaraio fsearch "<查询词>" --scope main,explore:*
# 搜指定 explore 库
scholaraio fsearch "<查询词>" --scope explore:my-survey
# 仅搜 arXiv(在线查询,不需要本地数据)
scholaraio fsearch "<查询词>" --scope arxiv
# 全部来源
scholaraio fsearch "<查询词>" --scope main,proceedings,explore:*,arxiv--scope 支持逗号分隔组合:main(主库融合搜索)、proceedings(论文集子论文)、explore:<名称> 或 explore:*(explore 库)、arxiv(在线 arXiv API)。默认 scope 为 main。arXiv 结果会标注 [已入库] 表示该论文已在本地库中。
将搜索结果整理后呈现给用户。融合检索结果中每项标注了匹配来源:
both:关键词和语义都命中(最相关)fts:仅关键词命中vec:仅语义命中复杂查询:当 CLI 参数组合无法满足需求时(如按一作姓氏首字母筛选、多条件交叉、自定义排序等),直接写 Python 读 configured papers library 下的 */meta.json 做查询。JSON 关键字段:
title, authors, first_author, first_author_lastname, year, doi, journal,
abstract, paper_type, citation_count (dict: crossref/semantic_scholar/openalex),
ids, toc, l3_conclusion用户说:"帮我搜一下 turbulent boundary layer 相关的论文"
→ 执行 usearch "turbulent boundary layer"
用户说:"用语义搜索找 drag reduction 的文献,给我前5篇"
→ 执行 vsearch "drag reduction" --limit 5
用户说:"找 Liao Z-M 的论文"
→ 执行 search-author "Liao"
用户说:"我库里引用最高的论文有哪些"
→ 转交 /citations skill(使用 top-cited 命令)
用户说:"2020年以后关于 drag reduction 的论文"
→ 执行 usearch "drag reduction" --year 2020-
用户说:"找 subgrid scale model 的原文证据片段,最好有行号"
→ 若未建 chunk 索引先执行 index --chunks,再执行 search --chunk "subgrid scale model"
用户说:"找 Moin 1982 numerical investigation turbulent channel flow"
→ 执行 usearch "numerical investigation turbulent channel flow" --year 1982;必要时再用 search-author "Moin" --year 1982 交叉确认,不要执行 search "P Moin 1982 numerical investigation turbulent channel flow"
用户说:"JFM 上发的湍流论文"
→ 执行 usearch "turbulence" --journal "Fluid Mechanics"
用户说:"库里引用最高的 review 文章"
→ 转交 /citations skill(使用 top-cited --type review 命令)
用户说:"帮我在 arXiv 上也搜一下 physics-informed neural network"
→ 执行 fsearch "physics-informed neural network" --scope main,arxiv
用户说:"所有来源都搜一下 drag reduction,包括 explore 库"
→ 执行 fsearch "drag reduction" --scope main,proceedings,explore:*,arxiv
用户说:"在我之前建的 wall-bounded-turbulence explore 库里搜 channel flow"
→ 执行 fsearch "channel flow" --scope explore:wall-bounded-turbulence
用户说:"连 proceedings 一起搜 granular damping"
→ 执行 fsearch "granular damping" --scope main,proceedings
© ZimoLiao, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in .claude/skills/search of ZimoLiao/scholaraio.
Open the folder on GitHubat commit 777628b
Search next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Search this skillZimoLiao/scholaraio | 577 | — | ~1.2k | Automated safety check: Pass | MIT | |
| Read arXiv Paperkarpathy/nanochat | 59k | 1 repos | ~494 | Automated safety check: Pass | MIT | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 20 repos | ~5.9k | Automated safety check: Notes | MIT | |
| Openalex Databaseneflibata-feng/MyArxiv-Agent | 126 | 12 repos | ~3k | Automated safety check: Pass | Custom licence | |
| Citation ManagementK-Dense-AI/claude-scientific-writer | 2.4k | 2 repos | ~3.9k | Automated safety check: Notes | MIT | |
| Citation Managementneflibata-feng/MyArxiv-Agent | 126 | 19 repos | ~8.1k | Automated safety check: Notes | MIT |
karpathy/nanochat
Fetches the TeX source of an arXiv paper from its URL, reads it and writes a markdown summary tied to the nanochat project.
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
neflibata-feng/MyArxiv-Agent
Query and analyze scholarly literature using the OpenAlex database.
K-Dense-AI/claude-scientific-writer
Finds papers in OpenAlex, PubMed and Google Scholar, turns DOIs, PMIDs and arXiv IDs into clean BibTeX, and validates citations for a manuscript or thesis.
neflibata-feng/MyArxiv-Agent
Comprehensive citation management for academic research. An agent skill from neflibata-feng/MyArxiv-Agent.
bytedance/deer-flow
Searches arXiv across many papers on one topic, extracts each paper's methodology and findings in parallel, and synthesizes a cited literature review.
ZimoLiao/scholaraio
A skill your agent uses when the user wants to create or inspect DOCX, PPTX, or XLSX files, generate a downloadable Office deliverable, or verify its structure and layout warnings with scholaraio…
ZimoLiao/scholaraio
A skill your agent uses when the user needs help choosing or organizing an academic-writing workflow by deliverable, stage, or format, including review articles, guided reading, paper sections, PPT…
ZimoLiao/scholaraio
A skill your agent uses when the user wants to browse arXiv preprints, search arXiv directly, fetch a PDF by arXiv ID or URL, or send a preprint into the ScholarAIO ingest pipeline.
ZimoLiao/scholaraio
A skill your agent uses when working on bioinformatics workflows such as alignment, variant calling, phylogenetics, or protein-structure analysis, especially across BLAST, minimap2, samtools…
ZimoLiao/scholaraio
A skill your agent uses when the user wants to verify citations in AI-generated or human-written text against the local knowledge base and catch hallucinated, wrong, or missing references.
ZimoLiao/scholaraio
A skill your agent uses when the user wants diagrams, flowcharts, architecture visuals, data relationships, timelines, concept maps, Mermaid, Graphviz, drawio, or polished paper figures generated…
Works with
Categories
A skill your agent uses when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore…. Search is an agent skill from ZimoLiao/scholaraio. Use when the user wants to find academic papers, search the local library, run keyword or semantic search, search by author, explore topics, or federate across library, explore databases, and arXiv.
Search fits situations like: the user wants to find academic papers; search the local library; semantic search; search by author.
Run `npx skills add ZimoLiao/scholaraio --skill search -a claude-code`. Or copy the skill folder (.claude/skills/search in ZimoLiao/scholaraio) into .claude/skills/search in your project. Claude Code loads it when a task matches its description.
Run `npx skills add ZimoLiao/scholaraio --skill search -a codex`. Or copy the skill folder (.claude/skills/search in ZimoLiao/scholaraio) into .agents/skills/search in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ZimoLiao/scholaraio --skill search -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/search, .gemini/skills/search, .github/skills/search and .opencode/skills/search in your project.
SKILL.md names no scripts, command-line tools or credentials: Search is instructions for the agent only. Our summary lists: Python 3.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Search is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.2k tokens (SKILL.md is roughly 4.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Search: Read arXiv Paper (karpathy/nanochat, 59k stars), Literature Review (neflibata-feng/MyArxiv-Agent, 126 stars), Openalex Database (neflibata-feng/MyArxiv-Agent, 126 stars) and Citation Management (K-Dense-AI/claude-scientific-writer, 2.4k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
ZimoLiao (a GitHub user) maintains it in ZimoLiao/scholaraio, which has 577 GitHub stars. The repository holds 43 skills in this directory. The repository was last updated on September 25, 2026.
Source: ZimoLiao/scholaraio on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.