Bioqc MCP
ClawBio/ClawBio
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation.
Search, browse, select, import, review, publish, and materialize reusable scientific-figure assets through Scientific Figure Library.
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-library --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/figure-library .claude/skills/figure-library && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .claude/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-libraryType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-library --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/figure-library .agents/skills/figure-library && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .agents/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-library --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/figure-library .cursor/skills/figure-library && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .cursor/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/xuzhougeng/ScientificFigureLibrary.git --path skills/figure-library--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-library --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/figure-library .gemini/skills/figure-library && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .gemini/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-libraryInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/figure-library .github/skills/figure-library && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .github/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install xuzhougeng/ScientificFigureLibrary figure-library --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/xuzhougeng/ScientificFigureLibrary.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/figure-library .opencode/skills/figure-library && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "figure-library" agent skill from https://github.com/xuzhougeng/ScientificFigureLibrary/tree/main/skills/figure-library into .opencode/skills/figure-library/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "figure-library", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
figure-librarySearch, browse, select, import, review, publish, and materialize reusable scientific-figure assets through Scientific Figure Library.
Figure Library is an agent skill from xuzhougeng/ScientificFigureLibrary. Search, browse, select, import, review, publish, and materialize reusable scientific-figure assets through Scientific Figure Library. Use for finding plotting references or managing the shared figure library; the host executes project tasks.
Its SKILL.md is about 2.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 27 other files, including reference files and assets (for example `agents/openai.yaml`, `references/figure-description/GUIDE.md` and `references/figure-description/references/figureya-writing-patterns.md`).
It sits in Data & Analytics, covering Data visualization. It works with Model Context Protocol and DeepSeek. The repository describes itself as: Local-first MCP App for scientific figures. Import, review, and publish a global library on disk; reuse exact templates in Pi, DeepSeek Harness (dsh), Claude, Codex, Cursor, and… The licence is MIT.
5 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 3291e4d. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Figure Library loads about 2.1k tokens when it runs, and up to ~27k if it reads all its reference files. Until then it costs about 64 tokens; SKILL.md has 1,032 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from xuzhougeng/ScientificFigureLibrary at commit 3291e4d, republished under its MIT licence (© xuzhougeng). 1,032 words, ~2,138 tokens.
.claude/skills/figure-library/SKILL.md (or your agent's skills folder). This skill also uses 19 other files; get the full folder from GitHub.Use the connected SFL tools and one user-selected global Library. The MCP App is optional: ordinary MCP tools can supply guidance, candidate thumbnails, pagination, exact previews, and materialization without loading App HTML.
For network problems, use figure_library_network_status to inspect this MCP
process's same-user/machine loopback HTTP proxy setting and
figure_library_network_test for a bounded check of the fixed SFL GitHub
Release endpoint. Remote or container MCP processes have separate settings.
figure_library_update_status reports the running version, latest stable
Release cache, freshness, and exact Release link; { "refresh": true } checks
manually. A new-version notice may appear as one additional text item on a
successful tool result; keep the structured result authoritative. Updating is
manual and requires restarting the MCP process.
These three tools return the standard terminal envelope and status fields in
structuredContent. Read envelope.code, terminal, and retrySameCall before
acting; do not repeat a failed diagnostic unchanged. A fresh update result with
cachePersisted: false is still valid for this process; report its cache warning
separately instead of treating the network check as failed.
This is the single Skill entrypoint. Read supporting files locally, or call
figure_library_get_skill with document set to their path relative to this
Skill directory. Calling it with no arguments returns this file plus the
available document IDs, resource URIs, hashes, service version and capabilities.
Resource-capable hosts may read those URIs instead. Resolve relative links
against the current document's directory; use the returned document IDs.
The tool returns the same bundled text, including optional helper source;
reading it does not install a Skill, execute helpers, or grant write approval.
figure_library_export_diagnostics.Use the existing description/style/organization guidance. Propose a readable English subtitle and a source-grounded scientific question; inspect the whole figure and relevant panel/legend/axis crops before and after rendering. The host runs plotting, not SFL. Use figure_library_plan_publish → one human review → figure_library_apply_publish. Default publication is local; open_module is explicit and ends at a PR. See library workflows for proposal fields and recovery. Keep provenance/execution truth in metadata, not repeated template-facing disclaimers.
figure_library_source_status when the effective Library/setup is
unknown. On setup_required, use the binding workflow and ask for the
missing absolute global Library and Local workspace directories. Never
infer either directory from the current project. figure_library_open
opens the optional App when the user requests it.figure_library_search returns a resultSetId, provider-qualified
exactSelectors, result-scoped candidateIds, thumbnail URIs and pagination.
Keep these returned identities unchanged. Default Providers are Local
Published, FigureYa, Open Figure Modules, then opted-in personal sources;
bundled Community is frozen and explicit-only (includeInDefaultSearch: false).figure_library_get_candidate_images with the result set and current-page
candidate IDs (at most 12). Display the returned images with their labels
using the host's image support. This is thumbnail browsing, not exact
preview confirmation. Do not generate replacement images.figure_library_search_page with the original resultSetId and opaque
nextCursor; do not alter the query to simulate pagination. Never walk all
candidates automatically. Explicit delegation to choose permits reviewing
a small relevant subset. Do not claim the user saw images merely because
the model received them; if the host cannot display them, report that limit.providerId and exactSelector.figure_library_preview_exact_headless for
the selected candidate, actually review the returned image, then call
figure_library_confirm_selection_headless with its previewChallenge.
User selection or explicit delegated review is required. Neither thumbnail
retrieval nor compatibility figure_library_preview creates a receipt.serverTools is absent, 选择并交给 Agent 审核 uses
updateModelContext.text to hand one selection to the headless path.
A capability-denied App call is not a reason to retry the same UI call.previewReceipt.
Call figure_library_plan_materialize with that receipt, the exact identity,
an absolute destination and the intended network policy. Show the concrete
plan and obtain approval before figure_library_apply_materialize; pass its
planDigest, a stable operationId, expectedProviderId and expectedTarget.
Follow library workflows for cache modes,
failures and replay. A lock file alone does not prove a successful Apply.figure_library_create_plot_task_headless uses
figure-library.app-plot-task-handoff.v2. Process every selected taskItems
entry, preserving independent preview/material/execution states. The task
handoff itself creates no receipt or execution approval.OUTCOME, CODE, NEXT_ACTION, and any missing confirmations. Every
response is terminal for that call (RETRY_SAME_CALL: false). Do not repeat
an identical failed, blocked, missing, stale or expired call. A fresh search
after search_results_stale creates new state; other errors follow their
stated next action. Never replace failed materialization with a downloader,
a different Provider, a fabricated lock or a substitute plot.© xuzhougeng, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 19 other files (references, assets) in skills/figure-library of xuzhougeng/ScientificFigureLibrary.
Open the folder on GitHubat commit 3291e4d
Figure Library next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Figure Library this skillxuzhougeng/ScientificFigureLibrary | 110 | — | ~2.1k | Automated safety check: Pass | MIT | |
| Bioqc MCPClawBio/ClawBio | 1.2k | — | ~2.2k | Automated safety check: Pass | MIT | |
| Noteworthysihooleebd/noteworthy | 120 | — | ~2k | Automated safety check: Pass | MIT | |
| Save Research Notebooknapjon/krisk | 117 | — | ~702 | Automated safety check: Pass | BSD-3-Clause | |
| Jupyter Notebook BuilderKilo-Org/kilo-marketplace | 190 | — | ~1.3k | Automated safety check: Pass | MIT | |
| Replnteract/nteract | 179 | — | ~1.4k | Automated safety check: Pass | BSD-3-Clause |
ClawBio/ClawBio
Automated sequencing quality control and advanced visualization wrapping FastQC, MultiQC, and custom chart generation.
sihooleebd/noteworthy
Write and edit Noteworthy documents — a Typst framework for textbooks, with blocks (definition/theorem/example/solution), 2D and 3D canvases, geometry, plotting, and live Yjs collaboration.
napjon/krisk
Convert a completed data-analysis conversation into evidence-backed, reproducible living research through the Krisk MCP server.
Kilo-Org/kilo-marketplace
Creates, inspects, edits and runs Jupyter notebooks, scaffolding experiment or tutorial notebooks from templates and preferring a Jupyter MCP server over raw JSON edits.
nteract/nteract
Use nteract notebooks as a persistent Python REPL. An agent skill from nteract/nteract.
SAP/open-ux-tools
Add analytical chart (chart + table hybrid) to SAP Fiori Elements List Report using aggregated data.
Works with
Categories
Search, browse, select, import, review, publish, and materialize reusable scientific-figure assets through Scientific Figure Library. Figure Library is an agent skill from xuzhougeng/ScientificFigureLibrary. Search, browse, select, import, review, publish, and materialize reusable scientific-figure assets through Scientific Figure Library.
Figure Library fits situations like: finding plotting references; managing the shared figure library; the host executes project tasks.
Run `npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a claude-code`. Or copy the skill folder (skills/figure-library in xuzhougeng/ScientificFigureLibrary) into .claude/skills/figure-library in your project. Claude Code loads it when a task matches its description.
Run `npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a codex`. Or copy the skill folder (skills/figure-library in xuzhougeng/ScientificFigureLibrary) into .agents/skills/figure-library in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add xuzhougeng/ScientificFigureLibrary --skill figure-library -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/figure-library, .gemini/skills/figure-library, .github/skills/figure-library and .opencode/skills/figure-library in your project.
SKILL.md names no scripts, command-line tools or credentials: Figure Library is instructions for the agent only.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Figure Library is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2.1k tokens (SKILL.md is roughly 8.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 25k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Figure Library: Bioqc MCP (ClawBio/ClawBio, 1.2k stars), Noteworthy (sihooleebd/noteworthy, 120 stars), Save Research Notebook (napjon/krisk, 117 stars) and Jupyter Notebook Builder (Kilo-Org/kilo-marketplace, 190 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
xuzhougeng (a GitHub user) maintains it in xuzhougeng/ScientificFigureLibrary, which has 110 GitHub stars. The repository was last updated on October 9, 2026.
Source: xuzhougeng/ScientificFigureLibrary on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.