Appendix Table Writer
WILLOSCAR/research-units-pipeline-skills
Curate reader-facing survey tables for the Appendix (clean layout + high information density), using only in-scope evidence and existing citation keys.
Write structured notes for each paper in the core set into papers/papernotes.jsonl (summary/method/results/limitations).
No licenceAuto-check passed
Install Paper Notes
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notes --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.codex/skills/paper-notes .claude/skills/paper-notes && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .claude/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notesType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notes --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.codex/skills/paper-notes .agents/skills/paper-notes && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .agents/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notes --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.codex/skills/paper-notes .cursor/skills/paper-notes && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .cursor/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/WILLOSCAR/research-units-pipeline-skills.git --path .codex/skills/paper-notes--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notes --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.codex/skills/paper-notes .gemini/skills/paper-notes && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .gemini/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notesInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/.codex/skills/paper-notes .github/skills/paper-notes && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .github/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install WILLOSCAR/research-units-pipeline-skills paper-notes --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/WILLOSCAR/research-units-pipeline-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.codex/skills/paper-notes .opencode/skills/paper-notes && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "paper-notes" agent skill from https://github.com/WILLOSCAR/research-units-pipeline-skills/tree/main/.codex/skills/paper-notes into .opencode/skills/paper-notes/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-notes", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
paper-notes- GitHub stars
- 513
- Token cost
- ~1.8k tokens
- SKILL.md length
- 736 words
- Files
- 10 (incl. scripts, references, assets)
- Skills in repo
- 107
- Repo updated
- First seen
- Licence
- None found
At a glance
Write structured notes for each paper in the core set into papers/papernotes.jsonl (summary/method/results/limitations).
- Works in 5 steps: Ensure coverage: every paper_id in… → Use mapping to choose high-priority papers → For high-priority papers, capture → …
- SKILL.md covers Triggers & routing, Load Order, Script Boundary and Role cards (prompt-level…, plus 8 more sections
- Runs Python scripts from its folder; calls uv
What it does
Paper Notes is an agent skill from WILLOSCAR/research-units-pipeline-skills. Write structured notes for each paper in the core set into papers/papernotes.jsonl (summary/method/results/limitations).
Its SKILL.md is about 1.8k tokens, which your agent loads only when the skill is triggered. The skill folder holds 12 other files, including scripts, reference files and assets (for example `assets/evidence_tags.json`, `assets/note_schema.json` and `assets/source_text_hygiene.json`).
The repository describes itself as: Research pipelines as semantic execution units: each skill declares inputs/outputs, acceptance criteria, and guardrails. Evidence-first methodology prevents hollow writing…
Example prompts
- “/paper-notes”
Requirements
- Python 3
Workflow steps
5 steps, taken from the first numbered list in SKILL.md.
- Ensure coverage: every paper_id in papers/core_set.csv must have one JSONL record.
- Use mapping to choose high-priority papers
- For high-priority papers, capture
- For long-tail papers
- Assign a stable bibkey for each paper for citation generation.
What it can do on your machine
Read from SKILL.md and the folder at commit c92912a. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships 1 file in scripts/ (Python), which the agent can run.
Shell commands in SKILL.md call:
uv
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Paper Notes loads about 1.8k tokens when it runs, and up to ~4.3k if it reads all its reference files. Until then it costs about 34 tokens; SKILL.md has 736 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 736 words (~1,759 tokens).
“Produce consistent, searchable paper notes that later steps (claims, visuals, writing) can reliably synthesize.”
- name
- paper-notes
Files
SKILL.md and 9 other files (scripts, references, assets) in .codex/skills/paper-notes of WILLOSCAR/research-units-pipeline-skills.
- SKILL.md
- assets/evidence_tags.json
- assets/note_schema.json
- assets/source_text_hygiene.json
- references/limitation_taxonomy.md
- references/note_schema.md
- references/overview.md
- references/result_extraction_examples.md
- references/source_text_hygiene.md
- scripts/run.py
Open the folder on GitHubat commit c92912a
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Write H2 chapter lead blocks (sections/S<secidlead.md) that preview the chapter's comparison lens and connect its H3 subsections, without adding new facts.
Chapter Skeleton
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Build a retrieval-informed chapter skeleton (outline/chapterskeleton.yml) from taxonomy/core scope before stable H3 decomposition.
Dedupe Rank
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A skill your agent uses when a broad paper candidate pool needs deterministic deduplication and a stable core set.
Questions about Paper Notes
What does Paper Notes do?
Write structured notes for each paper in the core set into papers/papernotes.jsonl (summary/method/results/limitations). Paper Notes is an agent skill from WILLOSCAR/research-units-pipeline-skills.jsonl (summary/method/results/limitations).
How do I install Paper Notes in Claude Code?
Run `npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a claude-code`. Or copy the skill folder (.codex/skills/paper-notes in WILLOSCAR/research-units-pipeline-skills) into .claude/skills/paper-notes in your project. Claude Code loads it when a task matches its description.
How do I install Paper Notes in Codex?
Run `npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a codex`. Or copy the skill folder (.codex/skills/paper-notes in WILLOSCAR/research-units-pipeline-skills) into .agents/skills/paper-notes in your project. Codex loads it when a task matches its description.
Can I use Paper Notes in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add WILLOSCAR/research-units-pipeline-skills --skill paper-notes -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/paper-notes, .gemini/skills/paper-notes, .github/skills/paper-notes and .opencode/skills/paper-notes in your project.
What does Paper Notes need to run?
Going by SKILL.md and its folder, Paper Notes needs Python for the scripts in its folder and the command-line tools its instructions call (uv). Our summary lists: Python 3.
Does Paper Notes access the network?
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Paper Notes safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
What licence does Paper Notes use?
No licence was found for Paper Notes or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Paper Notes use?
About 1.8k tokens (SKILL.md is roughly 7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 2.6k tokens, read only when the agent opens those files.
Who maintains Paper Notes?
WILLOSCAR (a GitHub user) maintains it in WILLOSCAR/research-units-pipeline-skills, which has 513 GitHub stars. The repository holds 107 skills in this directory. The repository was last updated on October 5, 2026.
Source: WILLOSCAR/research-units-pipeline-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.