Lammps Deepmd
Hello-QM/catgo-LRG
Run LAMMPS molecular dynamics with DeePMD-kit machine learning potentials.
Microsoft AI-driven R&D agent for automated data and model development
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install wentorai/research-plugins rd-agent-guide --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .claude/skills/rd-agent-guide && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .claude/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guideType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install wentorai/research-plugins rd-agent-guide --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .agents/skills/rd-agent-guide && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .agents/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install wentorai/research-plugins rd-agent-guide --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .cursor/skills/rd-agent-guide && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .cursor/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/wentorai/research-plugins.git --path skills/research/automation/rd-agent-guide--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install wentorai/research-plugins rd-agent-guide --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .gemini/skills/rd-agent-guide && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .gemini/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install wentorai/research-plugins rd-agent-guideInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .github/skills/rd-agent-guide && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .github/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wentorai/research-plugins --skill rd-agent-guide -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install wentorai/research-plugins rd-agent-guide --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/research/automation/rd-agent-guide .opencode/skills/rd-agent-guide && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "rd-agent-guide" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/research/automation/rd-agent-guide into .opencode/skills/rd-agent-guide/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "rd-agent-guide", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
rd-agent-guideMicrosoft AI-driven R&D agent for automated data and model development
Rd Agent Guide is an agent skill from wentorai/research-plugins. Microsoft AI-driven R&D agent for automated data and model development
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Data & Analytics, covering Machine learning. The repository describes itself as: 350+ academic research skills, MCP configs, and plugins for Research-Claw and AI agents. The licence is MIT.
4 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit bf44b3c. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
pipgitdockerFrom the folder's file list and the shell code blocks in SKILL.md.
Hosts in commands or code, which the agent is likely to contact:
github.comAlso links to:
microsoft.commicrosoft.github.ioFrom URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
OPENAI_API_KEYAZURE_OPENAI_API_KEYFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Rd Agent Guide loads about 1.9k tokens when it runs. Until then it costs about 21 tokens; SKILL.md has 436 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from wentorai/research-plugins at commit bf44b3c, republished under its MIT licence (© wentorai). 436 words, ~1,939 tokens.
.claude/skills/rd-agent-guide/SKILL.md (or your agent's skills folder).RD-Agent is an open-source AI-powered research and development automation framework developed by Microsoft Research, with over 12,000 stars on GitHub. It automates key steps in the R&D lifecycle -- including hypothesis generation, experiment design, code implementation, and result analysis -- enabling researchers and data scientists to accelerate their development cycles significantly.
The framework implements a closed-loop R&D automation pipeline where an AI agent iteratively proposes hypotheses, implements experiments, evaluates results, and refines its approach based on feedback. This mirrors the scientific method but operates at machine speed, allowing researchers to explore a much larger space of ideas and configurations than would be feasible manually.
RD-Agent is particularly valuable for researchers working in quantitative finance, data science, and machine learning, where the development process involves iterating on feature engineering, model architectures, and hyperparameter configurations. The framework has demonstrated the ability to autonomously develop competitive machine learning models and trading strategies, achieving results comparable to experienced human practitioners.
# Clone the repository
git clone https://github.com/microsoft/RD-Agent.git
cd RD-Agent
# Install dependencies
pip install -e .
# Or install from PyPI
pip install rdagent# LLM configuration (required)
export OPENAI_API_KEY=$OPENAI_API_KEY
export CHAT_MODEL=gpt-4o
# Or use Azure OpenAI
export AZURE_OPENAI_API_KEY=$AZURE_OPENAI_API_KEY
export AZURE_OPENAI_ENDPOINT=$AZURE_OPENAI_ENDPOINT
export AZURE_OPENAI_DEPLOYMENT=$AZURE_OPENAI_DEPLOYMENT
# Docker is required for sandboxed code execution
# Ensure Docker is installed and running
docker --versionRD-Agent uses Docker containers to execute generated code safely, ensuring that automatically generated experiments cannot affect the host system. This sandboxed execution is critical for an autonomous agent that writes and runs arbitrary code.
RD-Agent implements a continuous improvement loop with four phases:
from rdagent.core.runner import RDRunner
from rdagent.scenarios.data_science import DataScienceScenario
# Define the research scenario
scenario = DataScienceScenario(
task="tabular_classification",
dataset_path="path/to/dataset.csv",
target_column="label",
metric="auc",
)
# Create and run the R&D agent
runner = RDRunner(
scenario=scenario,
max_iterations=50,
llm_model="gpt-4o",
)
# Start the autonomous R&D loop
results = runner.run()
# Review the best solution found
print(f"Best metric: {results.best_score}")
print(f"Iterations: {results.total_iterations}")
print(f"Solutions explored: {results.num_solutions}")RD-Agent supports multiple R&D scenarios out of the box:
Automatically engineer features, select models, and tune hyperparameters for tabular data tasks:
from rdagent.scenarios.data_science import DataScienceScenario
scenario = DataScienceScenario(
task="tabular_regression",
dataset_path="data/housing.csv",
target_column="price",
metric="rmse",
time_budget_hours=4,
)Develop and backtest trading factors and strategies:
from rdagent.scenarios.qlib import QlibScenario
scenario = QlibScenario(
market="csi300",
task="alpha_factor_mining",
backtest_start="2020-01-01",
backtest_end="2024-12-31",
metric="information_coefficient",
)Iterate on model architectures and training procedures:
from rdagent.scenarios.model_dev import ModelDevScenario
scenario = ModelDevScenario(
task="image_classification",
base_model="resnet50",
dataset="cifar100",
optimization_target="accuracy",
)RD-Agent maintains detailed logs of all experiments, enabling post-hoc analysis of the R&D process:
# Access experiment history
for experiment in results.history:
print(f"Iteration {experiment.iteration}:")
print(f" Hypothesis: {experiment.hypothesis}")
print(f" Changes: {experiment.code_changes}")
print(f" Metric: {experiment.score}")
print(f" Analysis: {experiment.feedback}")Define custom evaluation metrics for domain-specific research:
from rdagent.core.evaluation import EvaluationFunction
class CustomMetric(EvaluationFunction):
def evaluate(self, predictions, ground_truth, **kwargs):
# Your custom metric computation
score = compute_domain_specific_metric(predictions, ground_truth)
return {
"primary_metric": score,
"secondary_metrics": {
"precision": compute_precision(predictions, ground_truth),
"recall": compute_recall(predictions, ground_truth),
}
}
scenario = DataScienceScenario(
evaluation_function=CustomMetric(),
# ... other config
)Guide the agent with human feedback at key decision points:
runner = RDRunner(
scenario=scenario,
human_in_the_loop=True,
review_frequency=5, # Review every 5 iterations
)
# The agent will pause for human review at specified intervals
# You can approve, reject, or modify proposed experimentsUse RD-Agent to systematically explore which components contribute most to model performance:
# Define ablation study
ablation_config = {
"base_model": "your_full_model",
"components_to_ablate": [
"attention_mechanism",
"residual_connections",
"layer_normalization",
"data_augmentation",
],
"metric": "accuracy",
"num_seeds": 5, # Run each configuration with 5 seeds
}Let the agent discover and implement novel features for your dataset:
scenario = DataScienceScenario(
task="feature_engineering",
dataset_path="data/research_data.csv",
existing_features=["feature_a", "feature_b", "feature_c"],
target="outcome",
max_new_features=20,
)Every experiment run by RD-Agent is fully reproducible. The framework saves the complete experiment specification including code, data transformations, random seeds, and environment details, enabling other researchers to reproduce and build upon the results.
© wentorai, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/research/automation/rd-agent-guide of wentorai/research-plugins.
Open the folder on GitHubat commit bf44b3c
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in wentorai/research-plugins, which our catalogue first saw on October 7, 2026.
Rd Agent Guide next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Rd Agent Guide this skillwentorai/research-plugins | 298 | 1 repos | ~1.9k | Automated safety check: Pass | MIT | |
| Lammps DeepmdHello-QM/catgo-LRG | 205 | 1 repos | ~1k | Automated safety check: Pass | AGPL-3.0 | |
| scikit-survival Time-to-Event Modelingdavila7/claude-code-templates | 32k | 12 repos | ~3.7k | Automated safety check: Pass | MIT | |
| Neuropixels AnalysisK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~5k | Automated safety check: Pass | MIT | |
| Molfeatdavila7/claude-code-templates | 32k | 10 repos | ~3.7k | Automated safety check: Pass | MIT | |
| IcmlnanoAgentTeam/research-claw | 293 | — | ~2.4k | Automated safety check: Pass | MIT |
Hello-QM/catgo-LRG
Run LAMMPS molecular dynamics with DeePMD-kit machine learning potentials.
davila7/claude-code-templates
Fits and evaluates survival models with scikit-survival: Cox models, Random Survival Forests, boosting, survival SVMs, concordance index, Brier score and competing risks.
K-Dense-AI/scientific-agent-skills
Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface.
davila7/claude-code-templates
Molecular featurization for ML (100+ featurizers). An agent skill from davila7/claude-code-templates.
nanoAgentTeam/research-claw
ICML (International Conference on Machine Learning) paper formatting — activate when the user wants to submit to ICML, follow ICML template, or fix ICML format issues.
Light0305/Light-skills
Light 科研主线第 7 步·结果分析:不描述好坏、解释「为什么」,把每条结论绑死到 claim + 证据强度,并防 p-hacking。
wentorai/research-plugins
Craft structured research abstracts that maximize clarity and journal acceptance
wentorai/research-plugins
Manage academic citations across BibTeX, APA, MLA, and Chicago formats
wentorai/research-plugins
Summarize academic papers with structured extraction of key elements
wentorai/research-plugins
Evidence-based study techniques for academic learning and retention
wentorai/research-plugins
Adjust writing tone and register for academic audiences and venues
wentorai/research-plugins
Academic translation, post-editing, and Chinglish correction guide
Microsoft AI-driven R&D agent for automated data and model development. Rd Agent Guide is an agent skill from wentorai/research-plugins.
Rd Agent Guide fits situations like: tasks that involve Machine learning.
Run `npx skills add wentorai/research-plugins --skill rd-agent-guide -a claude-code`. Or copy the skill folder (skills/research/automation/rd-agent-guide in wentorai/research-plugins) into .claude/skills/rd-agent-guide in your project. Claude Code loads it when a task matches its description.
Run `npx skills add wentorai/research-plugins --skill rd-agent-guide -a codex`. Or copy the skill folder (skills/research/automation/rd-agent-guide in wentorai/research-plugins) into .agents/skills/rd-agent-guide in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wentorai/research-plugins --skill rd-agent-guide -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/rd-agent-guide, .gemini/skills/rd-agent-guide, .github/skills/rd-agent-guide and .opencode/skills/rd-agent-guide in your project.
Going by SKILL.md and its folder, Rd Agent Guide needs the command-line tools its instructions call (pip, git and docker) and credentials named OPENAI_API_KEY and AZURE_OPENAI_API_KEY. Our summary lists: Python 3; Docker; A credential in OPENAI_API_KEY; A credential in AZURE_OPENAI_API_KEY.
SKILL.md names 3 domains. In commands or code: github.com; the agent is likely to contact it when it follows the instructions. As links in the text: microsoft.com and microsoft.github.io. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Rd Agent Guide is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.9k tokens (SKILL.md is roughly 7.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Rd Agent Guide: Lammps Deepmd (Hello-QM/catgo-LRG, 205 stars), scikit-survival Time-to-Event Modeling (davila7/claude-code-templates, 32k stars), Neuropixels Analysis (K-Dense-AI/scientific-agent-skills, 48k stars) and Molfeat (davila7/claude-code-templates, 32k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
wentorai (a GitHub user) maintains it in wentorai/research-plugins, which has 298 GitHub stars. The repository holds 405 skills in this directory. The repository was last updated on June 19, 2026.
Source: wentorai/research-plugins on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.