Bio Ensembl REST
GPTomics/bioSkills
Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species…
Manage open science projects and preprints via the OSF REST API
$ npx skills add wentorai/research-plugins --skill osf-api -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install wentorai/research-plugins osf-api --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/literature/fulltext/osf-api .claude/skills/osf-api && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .claude/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-apiType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add wentorai/research-plugins --skill osf-api -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install wentorai/research-plugins osf-api --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/literature/fulltext/osf-api .agents/skills/osf-api && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .agents/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wentorai/research-plugins --skill osf-api -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install wentorai/research-plugins osf-api --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/literature/fulltext/osf-api .cursor/skills/osf-api && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .cursor/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/wentorai/research-plugins.git --path skills/literature/fulltext/osf-api--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add wentorai/research-plugins --skill osf-api -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install wentorai/research-plugins osf-api --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/literature/fulltext/osf-api .gemini/skills/osf-api && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .gemini/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install wentorai/research-plugins osf-apiInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add wentorai/research-plugins --skill osf-api -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/literature/fulltext/osf-api .github/skills/osf-api && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .github/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add wentorai/research-plugins --skill osf-api -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install wentorai/research-plugins osf-api --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/wentorai/research-plugins.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/literature/fulltext/osf-api .opencode/skills/osf-api && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "osf-api" agent skill from https://github.com/wentorai/research-plugins/tree/main/skills/literature/fulltext/osf-api into .opencode/skills/osf-api/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "osf-api", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
osf-apiManage open science projects and preprints via the OSF REST API
Osf API is an agent skill from wentorai/research-plugins. Manage open science projects and preprints via the OSF REST API
Its SKILL.md is about 2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Academic paper search, Reproducible research and REST APIs. The repository describes itself as: 350+ academic research skills, MCP configs, and plugins for Research-Claw and AI agents. The licence is MIT.
Read from SKILL.md and the folder at commit bf44b3c. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
curlFrom the folder's file list and the shell code blocks in SKILL.md.
Hosts in commands or code, which the agent is likely to contact:
api.osf.ioosf.ioAlso links to:
developer.osf.iocos.ioFrom URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
OSF_TOKENFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Osf API loads about 2k tokens when it runs. Until then it costs about 18 tokens; SKILL.md has 363 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from wentorai/research-plugins at commit bf44b3c, republished under its MIT licence (© wentorai). 363 words, ~2,047 tokens.
.claude/skills/osf-api/SKILL.md (or your agent's skills folder).The Open Science Framework by the Center for Open Science provides infrastructure for the entire research lifecycle — project management, file storage, preprint hosting, and registrations. The API enables search, project creation, file management, and preprint discovery across OSF Preprints, PsyArXiv, SocArXiv, and 25+ community preprint servers. Free, no auth for read access.
Public read access requires no authentication. For creating or modifying resources, generate a personal access token at https://osf.io/settings/tokens.
# Public access (no auth needed)
curl "https://api.osf.io/v2/nodes/?filter[title]=reproducibility"
# Authenticated access for write operations
export OSF_TOKEN=$OSF_TOKEN
curl -H "Authorization: Bearer $OSF_TOKEN" \
"https://api.osf.io/v2/users/me/"https://api.osf.io/v2# Search across all OSF content
curl "https://api.osf.io/v2/search/?q=replication+crisis&page[size]=20"
# Search preprints
curl "https://api.osf.io/v2/preprints/?filter[q]=machine+learning&page[size]=20"
# Filter by preprint provider
curl "https://api.osf.io/v2/preprints/?filter[provider]=psyarxiv&filter[q]=cognitive+bias"
# Search registrations (pre-registered studies)
curl "https://api.osf.io/v2/registrations/?filter[q]=randomized+controlled+trial"# Get public projects
curl "https://api.osf.io/v2/nodes/?filter[public]=true&filter[q]=neuroimaging"
# Get project details
curl "https://api.osf.io/v2/nodes/{node_id}/"
# Get project files
curl "https://api.osf.io/v2/nodes/{node_id}/files/"
# Get project contributors
curl "https://api.osf.io/v2/nodes/{node_id}/contributors/"| Provider | Filter | Disciplines |
|---|---|---|
| OSF Preprints | osf | Multidisciplinary |
| PsyArXiv | psyarxiv | Psychology |
| SocArXiv | socarxiv | Social sciences |
| EarthArXiv | eartharxiv | Earth sciences |
| BioHackrXiv | biohackrxiv | Bioinformatics |
| engrXiv | engrxiv | Engineering |
| MedArXiv | medarxiv | Medical sciences |
| NutriXiv | nutrixiv | Nutrition |
| Parameter | Description | Example |
|---|---|---|
filter[q] | Text search | filter[q]=open+data |
filter[provider] | Preprint server | filter[provider]=psyarxiv |
filter[subjects] | Subject filter | Subject taxonomy ID |
filter[date_created] | Date filter | filter[date_created][gte]=2024-01-01 |
page[size] | Results per page (max 100) | page[size]=50 |
page | Page number | page=2 |
{
"data": [
{
"id": "abc12",
"type": "preprints",
"attributes": {
"title": "Replication of the Ego Depletion Effect",
"description": "We attempted to replicate...",
"date_created": "2024-06-15T10:00:00Z",
"date_published": "2024-06-16T08:00:00Z",
"doi": "10.31234/osf.io/abc12",
"is_published": true,
"subjects": [["Social and Behavioral Sciences", "Psychology"]],
"tags": ["replication", "ego depletion"]
},
"relationships": {
"contributors": {"links": {"related": {"href": "..."}}},
"primary_file": {"links": {"related": {"href": "..."}}}
}
}
]
}import requests
BASE_URL = "https://api.osf.io/v2"
def search_preprints(query: str, provider: str = None,
page_size: int = 20) -> list:
"""Search OSF preprints across providers."""
params = {
"filter[q]": query,
"page[size]": page_size,
}
if provider:
params["filter[provider]"] = provider
resp = requests.get(f"{BASE_URL}/preprints/", params=params)
resp.raise_for_status()
data = resp.json()
results = []
for item in data.get("data", []):
attrs = item.get("attributes", {})
results.append({
"id": item.get("id"),
"title": attrs.get("title"),
"description": (attrs.get("description") or "")[:300],
"doi": attrs.get("doi"),
"date": attrs.get("date_published", "")[:10],
"tags": attrs.get("tags", []),
"url": f"https://osf.io/{item.get('id')}/",
})
return results
def search_registrations(query: str,
page_size: int = 20) -> list:
"""Search pre-registered studies on OSF."""
params = {
"filter[q]": query,
"page[size]": page_size,
}
resp = requests.get(f"{BASE_URL}/registrations/", params=params)
resp.raise_for_status()
data = resp.json()
results = []
for item in data.get("data", []):
attrs = item.get("attributes", {})
results.append({
"id": item.get("id"),
"title": attrs.get("title"),
"description": (attrs.get("description") or "")[:300],
"date_registered": attrs.get("date_registered", "")[:10],
"registration_schema": attrs.get("registration_supplement"),
})
return results
def get_project_files(node_id: str) -> list:
"""List files in an OSF project."""
resp = requests.get(f"{BASE_URL}/nodes/{node_id}/files/")
resp.raise_for_status()
data = resp.json()
providers = []
for item in data.get("data", []):
attrs = item.get("attributes", {})
providers.append({
"provider": attrs.get("provider"),
"name": attrs.get("name"),
})
return providers
# Example: search psychology preprints
preprints = search_preprints("cognitive load", provider="psyarxiv")
for p in preprints[:5]:
print(f"[{p['date']}] {p['title']}")
print(f" DOI: {p['doi']}")
# Example: find pre-registered clinical trials
regs = search_registrations("randomized placebo")
for r in regs[:5]:
print(f"[{r['date_registered']}] {r['title']}")page and page[size] parameters; default page size is 10data key, relationships are linkedfields[nodes]=title,date_created to request only needed fieldsembed=contributors to include related resources in a single requestlinks.next URL for pagination© wentorai, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/literature/fulltext/osf-api of wentorai/research-plugins.
Open the folder on GitHubat commit bf44b3c
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in wentorai/research-plugins, which our catalogue first saw on October 7, 2026.
Osf API next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Osf API this skillwentorai/research-plugins | 298 | 1 repos | ~2k | Automated safety check: Pass | MIT | |
| Bio Ensembl RESTGPTomics/bioSkills | 1.2k | 2 repos | ~3.6k | Automated safety check: Pass | MIT | |
| Peer ReviewK-Dense-AI/claude-scientific-writer | 2.4k | 2 repos | ~3.1k | Automated safety check: Notes | MIT | |
| Literature ReviewK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~3.2k | Automated safety check: Notes | MIT | |
| Literature Search Methodologyaiming-lab/AutoResearchClaw | 15k | — | ~709 | Automated safety check: Pass | MIT | |
| Lit SynthesizerClawBio/ClawBio | 1.2k | 1 repos | ~2.5k | Automated safety check: Pass | MIT |
GPTomics/bioSkills
Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species…
K-Dense-AI/claude-scientific-writer
Prepare evidence-bounded, constructive peer-review drafts and structured manuscript assessments.
K-Dense-AI/scientific-agent-skills
Runs systematic, scoping or narrative literature reviews across PubMed, arXiv, bioRxiv and Semantic Scholar, with citation checks and Markdown or PDF output.
aiming-lab/AutoResearchClaw
Lays out a systematic literature review method: PICO-based search strategy, inclusion criteria, PRISMA screening, quality assessment tools and synthesis approaches.
ClawBio/ClawBio
Search PubMed and bioRxiv for bioinformatics literature, synthesise results into a structured report, and build a citation graph — all locally, with a reproducibility bundle.
joshzyj/open-scholar-skill
Implement open science practices for a social science study.
wentorai/research-plugins
Craft structured research abstracts that maximize clarity and journal acceptance
wentorai/research-plugins
Manage academic citations across BibTeX, APA, MLA, and Chicago formats
wentorai/research-plugins
Summarize academic papers with structured extraction of key elements
wentorai/research-plugins
Evidence-based study techniques for academic learning and retention
wentorai/research-plugins
Adjust writing tone and register for academic audiences and venues
wentorai/research-plugins
Academic translation, post-editing, and Chinglish correction guide
Categories
Manage open science projects and preprints via the OSF REST API. Osf API is an agent skill from wentorai/research-plugins.
Osf API fits situations like: tasks that involve Academic paper search; tasks that involve Reproducible research; tasks that involve REST APIs.
Run `npx skills add wentorai/research-plugins --skill osf-api -a claude-code`. Or copy the skill folder (skills/literature/fulltext/osf-api in wentorai/research-plugins) into .claude/skills/osf-api in your project. Claude Code loads it when a task matches its description.
Run `npx skills add wentorai/research-plugins --skill osf-api -a codex`. Or copy the skill folder (skills/literature/fulltext/osf-api in wentorai/research-plugins) into .agents/skills/osf-api in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add wentorai/research-plugins --skill osf-api -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/osf-api, .gemini/skills/osf-api, .github/skills/osf-api and .opencode/skills/osf-api in your project.
Going by SKILL.md and its folder, Osf API needs the command-line tools its instructions call (curl) and credentials named OSF_TOKEN. Our summary lists: Python 3; A credential in OSF_TOKEN.
SKILL.md names 4 domains. In commands or code: api.osf.io and osf.io; the agent is likely to contact these when it follows the instructions. As links in the text: developer.osf.io and cos.io. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Osf API is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 2k tokens (SKILL.md is roughly 8.2k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Osf API: Bio Ensembl REST (GPTomics/bioSkills, 1.2k stars), Peer Review (K-Dense-AI/claude-scientific-writer, 2.4k stars), Literature Review (K-Dense-AI/scientific-agent-skills, 48k stars) and Literature Search Methodology (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
wentorai (a GitHub user) maintains it in wentorai/research-plugins, which has 298 GitHub stars. The repository holds 405 skills in this directory. The repository was last updated on June 19, 2026.
Source: wentorai/research-plugins on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.