Bio Proteomics Data Import
GPTomics/bioSkills
Loads mass-spectrometry data into Python/R and strips the search engine's bookkeeping before any number is trusted -- removes decoys (REV/Reverse), contaminants (CON/Potential contaminant)…
Read and explain raw Claude Code and Codex CLI session logs in this coding-trace repo.
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install uw-syfi/TraceLab coding-trace-raw --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/coding-trace-raw .claude/skills/coding-trace-raw && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .claude/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-rawType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install uw-syfi/TraceLab coding-trace-raw --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/coding-trace-raw .agents/skills/coding-trace-raw && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .agents/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install uw-syfi/TraceLab coding-trace-raw --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/coding-trace-raw .cursor/skills/coding-trace-raw && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .cursor/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/uw-syfi/TraceLab.git --path skills/coding-trace-raw--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install uw-syfi/TraceLab coding-trace-raw --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/coding-trace-raw .gemini/skills/coding-trace-raw && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .gemini/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install uw-syfi/TraceLab coding-trace-rawInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/coding-trace-raw .github/skills/coding-trace-raw && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .github/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install uw-syfi/TraceLab coding-trace-raw --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/uw-syfi/TraceLab.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/coding-trace-raw .opencode/skills/coding-trace-raw && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "coding-trace-raw" agent skill from https://github.com/uw-syfi/TraceLab/tree/main/skills/coding-trace-raw into .opencode/skills/coding-trace-raw/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "coding-trace-raw", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
coding-trace-rawRead and explain raw Claude Code and Codex CLI session logs in this coding-trace repo.
Coding Trace Raw is an agent skill from uw-syfi/TraceLab. Read and explain raw Claude Code and Codex CLI session logs in this coding-trace repo. Use when inspecting examplesessions, raw .claude/.codex JSONL records, provider record families, duplicate-looking runtime layers, raw tool-call pairing, exposed or omitted fields, token accounting records before normalization, or representative raw windows from findrepresentativesessionsegments.py.
Its SKILL.md is about 1.3k tokens, which your agent loads only when the skill is triggered. The skill folder holds 2 other files (for example `agents/openai.yaml`).
It sits in Business, Finance & HR, covering Accounting and bookkeeping and Database schema design. The repository describes itself as: An open toolkit and public dataset hub for collecting, sanitizing, analyzing, and visualizing coding agent traces. The licence is Apache-2.0.
5 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 11b8b14. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
uvpythonFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Coding Trace Raw loads about 1.3k tokens when it runs. Until then it costs about 102 tokens; SKILL.md has 553 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from uw-syfi/TraceLab at commit 11b8b14, republished under its Apache-2.0 licence (© uw-syfi). 553 words, ~1,314 tokens.
.claude/skills/coding-trace-raw/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.Use this skill to reason about raw coding-agent trace files before they are converted into normalized round rows. Keep the distinction clear: raw traces preserve provider-specific runtime records, while normalized traces collapse those records into one JSONL row per LLM invocation.
pyproject.toml, README.md, and scripts/collect_llm_traces.py.example_sessions/claude/explanation.mdexample_sessions/codex/explanation.mdexample_sessions/claude/trace.jsonexample_sessions/codex/trace.jsontrace.json examples and generated *.expanded.json files as human-readable record dumps with separators. Individual JSON blocks are valid, but the whole expanded file is not one JSON document.sed, rg, head, python -c, or scripts/find_representative_session_segments.py.Claude Code raw records commonly include:
user: visible user messages and tool result messages. Tool results are stored as user records with message.content[] blocks of type tool_result.assistant: model output records. One assistant message can be split across several records that share the same message.id.attachment: auxiliary runtime context such as skill listings or task reminders.system, last-prompt, ai-title, mode, permission-mode, file-history-snapshot: UI/runtime bookkeeping, not separate LLM calls.When interpreting Claude:
assistant record as a separate LLM invocation. Deduplicate by assistant message.id when reading usage.tool_use.id to later user tool_result.tool_use_id.message.usage: input_tokens, cache_creation_input_tokens, cache_read_input_tokens, and output_tokens.cache_read_input_tokens as prompt-cache hit prefix tokens.cache_creation_input_tokens + input_tokens as new prompt-side work for that API call.thinking blocks. Public examples preserve that a thinking block existed, not its contents.Codex CLI raw records commonly include:
session_meta: session metadata, base instructions, source, model provider, cwd, and git metadata.turn_context: per-turn runtime context such as cwd, sandbox, model, date, and collaboration mode.response_item: structured API-stream items such as messages, reasoning placeholders, function calls, and function-call outputs.event_msg: runtime/UI events such as task_started, user_message, agent_message, token_count, and task_complete.When interpreting Codex:
response_item and event_msg.user_message; an assistant reply can appear as both response_item and event_msg.agent_message.response_item.payload.type == "function_call" and later function_call_output records with the same call id.event_msg.token_count as accounting for the preceding model round. last_token_usage.input_tokens already includes cached tokens.cached_input_tokens as prompt-cache hit prefix tokens and input_tokens - cached_input_tokens as uncached prompt-side work.reasoning_output_tokens as a subset of output_tokens, not an additional count.Use the finder when the user needs compact raw examples from local histories:
uv run python scripts/find_representative_session_segments.py --provider claude codex --export-dir artifacts/raw_windowsUseful options:
--provider claude or --provider codex to focus one format.--min-tool-calls, --min-tool-results, --min-usage, and --min-token-count to require richer windows.--max-file-size-mb 0 only when a full scan is acceptable.--export-dir to write raw JSONL, expanded text, per-record JSON, and a manifest.When answering raw-trace questions:
$coding-trace-normalize or $coding-trace-analyze after identifying the raw source.© uw-syfi, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file in skills/coding-trace-raw of uw-syfi/TraceLab.
Open the folder on GitHubat commit 11b8b14
Coding Trace Raw next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Coding Trace Raw this skilluw-syfi/TraceLab | 138 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | |
| Bio Proteomics Data ImportGPTomics/bioSkills | 1.2k | 1 repos | ~4.5k | Automated safety check: Pass | MIT | |
| Self AwarenessJimLiu/science-skills | 227 | 2 repos | ~3.4k | Automated safety check: Pass | Apache-2.0 | |
| Sync Upstreamnyaruka/phonenumbers | 1.6k | — | ~2.8k | Automated safety check: Pass | MIT | |
| Longbridge Value Investinghelsome/folio | 269 | 2 repos | ~1.2k | Automated safety check: Pass | MIT | |
| Radiology Tablehuang-sir1/radiology-skills | 1.9k | — | ~1.3k | Automated safety check: Pass | Custom licence |
GPTomics/bioSkills
Loads mass-spectrometry data into Python/R and strips the search engine's bookkeeping before any number is trusted -- removes decoys (REV/Reverse), contaminants (CON/Potential contaminant)…
JimLiu/science-skills
Claude Science's own session database schema and SDK surface for introspection via host.query().
nyaruka/phonenumbers
Sync this Go port with a new upstream google/libphonenumber release — regenerate the embedded metadata and reconcile the ported Java logic.
helsome/folio
Value investing analysis using Graham (NCAV/net-net/defensive-investor) and Buffett (economic moat/ROE/FCF) methodologies.
huang-sir1/radiology-skills
Create/audit editable publication tables with source reconciliation; not figures or statistical inference.
erpipe-org/mcp-odoo
Review many client Odoo databases at once through odoo-mcp's cross-instance tools — fleet-wide accounting health, per-client aging, partial-failure triage — for agencies and partners managing 5–50…
uw-syfi/TraceLab
Prepare, publish, refresh, or validate the TraceLab public dataset on Hugging Face under UW-SyFI/TraceLab.
uw-syfi/TraceLab
Run, summarize, plot, validate, and export normalized coding-trace JSONL files.
uw-syfi/TraceLab
Collect, count, and extract Claude Code and Codex CLI local histories into normalized coding-trace JSONL files.
uw-syfi/TraceLab
Explain and work with the normalized coding-trace JSONL row format produced by extractclauderounds.py, extractcodexrounds.py, and collectllmtraces.py.
uw-syfi/TraceLab
Sanitize normalized coding-trace JSONL rows for public sharing.
uw-syfi/TraceLab
Publish TraceLab snapshots from the internal repo to the public uw-syfi/TraceLab GitHub repo as clean, mergeable, incremental pull requests from a persistent public mirror branch.
Categories
Read and explain raw Claude Code and Codex CLI session logs in this coding-trace repo. Coding Trace Raw is an agent skill from uw-syfi/TraceLab. Read and explain raw Claude Code and Codex CLI session logs in this coding-trace repo.
Coding Trace Raw fits situations like: inspecting examplesessions; raw .claude/.codex JSONL records; provider record families; duplicate-looking runtime layers.
Run `npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a claude-code`. Or copy the skill folder (skills/coding-trace-raw in uw-syfi/TraceLab) into .claude/skills/coding-trace-raw in your project. Claude Code loads it when a task matches its description.
Run `npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a codex`. Or copy the skill folder (skills/coding-trace-raw in uw-syfi/TraceLab) into .agents/skills/coding-trace-raw in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add uw-syfi/TraceLab --skill coding-trace-raw -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/coding-trace-raw, .gemini/skills/coding-trace-raw, .github/skills/coding-trace-raw and .opencode/skills/coding-trace-raw in your project.
Going by SKILL.md and its folder, Coding Trace Raw needs the command-line tools its instructions call (uv and python). Our summary lists: Python 3.
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Coding Trace Raw is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.3k tokens (SKILL.md is roughly 5.3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Coding Trace Raw: Bio Proteomics Data Import (GPTomics/bioSkills, 1.2k stars), Self Awareness (JimLiu/science-skills, 227 stars), Sync Upstream (nyaruka/phonenumbers, 1.6k stars) and Longbridge Value Investing (helsome/folio, 269 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
uw-syfi (a GitHub organization) maintains it in uw-syfi/TraceLab, which has 138 GitHub stars. The repository holds 7 skills in this directory. The repository was last updated on August 22, 2026.
Source: uw-syfi/TraceLab on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.