Multi Source Synthesis

digraph layer2_pipeline {
    rankdir=TB;

    subgraph cluster_inputs {
        label="Layer 1 Intelligence Sources";
        style=dashed;
        "Source Code Analysis" [shape=folder];
        "Public Documentation" [shape=folder];
        "SDK / Ecosystem" [shape=folder];
        "Runtime Observation" [shape=folder];
        "Binary Analysis" [shape=folder];
        "Community Intelligence" [shape=folder];
    }

    subgraph cluster_phase1 {
        label="Phase 1 (parallel)";
        style=filled;
        fillcolor="#e8f4e8";
        "feature-discoverer" [shape=box];
        "architecture-analyst" [shape=box];
        "api-extractor" [shape=box];
    }

    subgraph cluster_phase2 {
        label="Phase 2";
        style=filled;
        fillcolor="#e8e8f4";
        "analysis-synthesizer" [shape=box];
    }

    subgraph cluster_phase3 {
        label="Phase 3";
        style=filled;
        fillcolor="#f4e8e8";
        "module-mapper" [shape=box];
    }

    "Source Code Analysis" -> "feature-discoverer";
    "Source Code Analysis" -> "architecture-analyst";
    "Source Code Analysis" -> "api-extractor";
    "Public Documentation" -> "feature-discoverer";
    "Public Documentation" -> "architecture-analyst";
    "Public Documentation" -> "api-extractor";
    "SDK / Ecosystem" -> "feature-discoverer";
    "SDK / Ecosystem" -> "api-extractor";
    "Runtime Observation" -> "feature-discoverer";
    "Runtime Observation" -> "architecture-analyst";
    "Runtime Observation" -> "api-extractor";
    "Binary Analysis" -> "architecture-analyst";
    "Community Intelligence" -> "feature-discoverer";

    "feature-discoverer" -> "analysis-synthesizer";
    "architecture-analyst" -> "analysis-synthesizer";
    "api-extractor" -> "analysis-synthesizer";

    "Source Code Analysis" -> "analysis-synthesizer" [style=dashed, label="raw L1"];
    "Public Documentation" -> "analysis-synthesizer" [style=dashed, label="raw L1"];
    "Runtime Observation" -> "analysis-synthesizer" [style=dashed, label="raw L1"];

    "analysis-synthesizer" -> "module-mapper";
    "feature-discoverer" -> "module-mapper";
    "architecture-analyst" -> "module-mapper";
    "api-extractor" -> "module-mapper";

    "module-mapper" -> "Layer 3 Deep Dives" [shape=doublecircle];
}

Required (at least one must exist):
  workspace/raw/source/analysis/       Source code chunk analyses
  workspace/public/docs/                   Documentation research output
  workspace/public/ecosystem/              SDK and ecosystem analysis
  workspace/public/community/              Community intelligence (forums, tutorials, issues)
  workspace/raw/runtime/               Runtime observation output
  workspace/raw/binary/                Binary analysis output

Phase 1 output (consumed by Phase 2 and Phase 3):
  workspace/raw/synthesis/features/       feature-discoverer output
  workspace/raw/synthesis/architecture/   architecture-analyst output
  workspace/raw/synthesis/api/            api-extractor output

Phase 2 output (consumed by Phase 3):
  workspace/raw/synthesis/behavioral-summaries/   analysis-synthesizer output
  workspace/raw/synthesis/cross-reference-report.md
  workspace/raw/synthesis/reimplementation-essentials.md

[ -d "workspace/raw/source/analysis/" ]                && HAS_SOURCE=true    || HAS_SOURCE=false
[ -d "workspace/public/docs/" ]                            && HAS_DOCS=true      || HAS_DOCS=false
[ -d "workspace/public/ecosystem/" ]                       && HAS_SDK=true       || HAS_SDK=false
[ -d "workspace/public/community/" ]                       && HAS_COMMUNITY=true || HAS_COMMUNITY=false
[ -d "workspace/raw/runtime/" ]                        && HAS_RUNTIME=true   || HAS_RUNTIME=false
[ -d "workspace/raw/binary/" ]                         && HAS_BINARY=true    || HAS_BINARY=false

## Mode Coverage Summary

| Mode | Available | Items Discovered |
|------|-----------|------------------|
| Source Code | YES/NO | [count] |
| Public Docs | YES/NO | [count] |
| SDK / Ecosystem | YES/NO | [count] |
| Community | YES/NO | [count] |
| Runtime Observation | YES/NO | [count] |
| Binary Analysis | YES/NO | [count] |

| Feature | Category | Description | Discovery Sources | Confidence |
|---------|----------|-------------|-------------------|------------|
| --workers | CLI flag | Set worker pool size | source-code, official-docs, runtime | confirmed |
| --debug | CLI flag | Enable debug logging | source-code | inferred |

workspace/raw/synthesis/features/
    feature-inventory.md        # Complete flat inventory of all features
    features-by-category.md     # Grouped: CLI, config, API, UI, etc.
    features-by-priority.md     # Grouped by implementation priority
    features-cli.md             # CLI flags, subcommands, arguments
    features-commands.md        # Interactive/runtime commands
    features-shortcuts.md       # Keyboard shortcuts
    features-environment.md     # Environment variables
    features-config.md          # Config file keys

### Component: API Server

| Mode | Evidence |
|------|----------|
| Source Code | Request handling in chunks 003-005, routing logic, middleware chain |
| Public Docs | API reference describes REST endpoints and authentication |
| Runtime | HTTP server observed listening on port 3000 |
| SDK | Client library has `ClientAdapter` class with matching method names |

**Confidence:** confirmed (4 independent sources)

workspace/raw/synthesis/architecture/
    architecture.md             # Full architecture document (all 4 perspectives)
    components.md               # Component catalog with relationships
    component-map.md            # Visual/structural component map
    data-flows.md               # Data flow mapping (I/O boundaries, internal flow)
    dependencies.md             # External dependency catalog
    entry-points.md             # All ways to invoke the system
    architecture-sources.md     # Per-component mode evidence table
    notes/                      # Raw findings captured during analysis

workspace/raw/synthesis/api/
    cli-interface.md           # Complete CLI reference
    http-api.md                # HTTP/REST endpoints (if applicable)
    config-api.md              # Configuration files and keys
    env-vars.md                # Environment variables
    exports.md                 # Programmatic exports
    events.md                  # Event system
    file-formats.md            # File formats read/written
    api-corroboration.md       # Per-endpoint multi-source agreement table
    notes/                     # Raw extraction findings

digraph synthesis_process {
    rankdir=TB;

    "Read all Phase 1 + Layer 1 output" [shape=doublecircle];
    "Identify behavioral domains" [shape=box];
    "For each domain: collect claims from all modes" [shape=box];
    "Identify agreements (corroboration)" [shape=box];
    "Identify contradictions" [shape=box];
    "Apply conflict resolution hierarchy" [shape=box];
    "Identify coverage gaps" [shape=box];
    "Write behavioral summary for domain" [shape=box];
    "All domains processed?" [shape=diamond];
    "Perform systematic cross-reference" [shape=box];
    "Write cross-reference report" [shape=box];
    "Write reimplementation essentials" [shape=box];
    "Synthesis complete" [shape=doublecircle];

    "Read all Phase 1 + Layer 1 output" -> "Identify behavioral domains";
    "Identify behavioral domains" -> "For each domain: collect claims from all modes";
    "For each domain: collect claims from all modes" -> "Identify agreements (corroboration)";
    "Identify agreements (corroboration)" -> "Identify contradictions";
    "Identify contradictions" -> "Apply conflict resolution hierarchy";
    "Apply conflict resolution hierarchy" -> "Identify coverage gaps";
    "Identify coverage gaps" -> "Write behavioral summary for domain";
    "Write behavioral summary for domain" -> "All domains processed?";
    "All domains processed?" -> "For each domain: collect claims from all modes" [label="no"];
    "All domains processed?" -> "Perform systematic cross-reference" [label="yes"];
    "Perform systematic cross-reference" -> "Write cross-reference report";
    "Write cross-reference report" -> "Write reimplementation essentials";
    "Write reimplementation essentials" -> "Synthesis complete";
}

### Session Timeout

**Claim:** Sessions expire after 30 minutes of inactivity.

**Sources:**
- Public docs: "Sessions are invalidated after 30 minutes of inactivity"
  <!-- cite: source=official-docs, ref=workspace/public/docs/claims/claims-by-topic.md:89, confidence=confirmed, agent=doc-researcher -->
- Source code: SESSION_TIMEOUT constant = 1800000 (30 minutes in ms)
  <!-- cite: source=source-code, ref=workspace/raw/source/analysis/chunk-0058.md:91, confidence=inferred, agent=chunk-analyzer -->
- Runtime: Session expired after 30m idle in CLI test
  <!-- cite: source=runtime-observation, ref=workspace/raw/runtime/cli/session-test.md:34, confidence=confirmed, agent=cli-explorer -->

**Synthesis:** CONFIRMED by 3 independent sources.
<!-- cite: source=official-docs, ref=workspace/public/docs/claims/claims-by-topic.md:89, confidence=confirmed, agent=analysis-synthesizer, corroborated_by=source-code,runtime-observation -->

1. Runtime observation (reproducible, documented procedure)
2. Source code (direct implementation evidence)
3. Official documentation (may be stale)
4. SDK analysis (may lag behind)
5. Community knowledge (may be outdated or wrong)
6. Binary analysis (may reflect different version)
7. Inferred (reasoning without direct evidence)

### Coverage Gap: WebSocket Reconnection Logic

**Known from:** source-code only
**Not found in:** public-docs, sdk-analysis, runtime-observation
**Classification:** Expected gap. Internal implementation concern.
**Recommendation:** If runtime observation mode becomes available, add a targeted reconnection test.