Agent skill

Deep Research

by nateberkopec in nateberkopec/dotfiles

Produce an in-depth, source-grounded research report. An agent skill from nateberkopec/dotfiles.

No licenceAuto-check passedResearch & Science

Install Deep Research

skills CLI
$ npx skills add nateberkopec/dotfiles --skill deep-research -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install nateberkopec/dotfiles deep-research --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/nateberkopec/dotfiles.git skills-src && mkdir -p .claude/skills && cp -r skills-src/files/home/.agents/skills/deep-research .claude/skills/deep-research && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
deep-research
GitHub stars
147
Token cost
~738 tokens
SKILL.md length
374 words
Files
3 (incl. references)
Skills in repo
5
Repo updated
First seen
Licence
None found

At a glance

Produce an in-depth, source-grounded research report. An agent skill from nateberkopec/dotfiles.

  • Works in 5 steps: Define the question → Delegate reconnaissance → Research and close gaps → …
  • Broad questions requiring multiple research threads
  • SKILL.md covers 1. Define the question, 2. Delegate reconnaissance, 3. Research and close gaps and 4. Synthesize, plus 1 more section
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

Deep Research is an agent skill from nateberkopec/dotfiles. Produce an in-depth, source-grounded research report. Use for broad questions requiring multiple research threads, reconciliation, and a cited report rather than a quick factual lookup.

Its SKILL.md is about 740 tokens, which your agent loads only when the skill is triggered. The skill folder holds 3 other files, including reference files (for example `references/agent-briefs.md` and `references/research-frameworks.md`).

It sits in Research & Science, covering Deep research, Accounting and bookkeeping and Source-grounded notebooks. The repository describes itself as: yup we're doin the thing.

When your agent uses it

  • Broad questions requiring multiple research threads
  • A cited report rather than a quick factual lookup

Example prompts

  • “/deep-research”

Workflow steps

5 steps, taken from the step headings in SKILL.md.

  1. Define the question
  2. Delegate reconnaissance
  3. Research and close gaps
  4. Synthesize
  5. Deliver

What it can do on your machine

Read from SKILL.md and the folder at commit 6afb80d. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Deep Research loads about 738 tokens when it runs, and up to ~2.3k if it reads all its reference files. Until then it costs about 50 tokens; SKILL.md has 374 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~50
When it runs · the whole SKILL.md, loaded when a task matches
~738
With references · SKILL.md plus every file in references/, read only if the agent opens them
~2.3k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 374 words (~738 tokens).

“Use separate agents for source gathering and final synthesis so each role keeps a clean context. The lead coordinates, interviews, delegates reconnaissance, checks coverage, and validates the final report; it does not perform independent web research.”

— opening of SKILL.md by nateberkopec
name
deep-research

Read the full SKILL.md on GitHub

Files

SKILL.md and 2 other files (references) in files/home/.agents/skills/deep-research of nateberkopec/dotfiles.

  • SKILL.md
  • references/agent-briefs.md
  • references/research-frameworks.md

Open the folder on GitHubat commit 6afb80d

Compare with similar skills

Deep Research next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Deep Research compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Deep Research this skillnateberkopec/dotfiles147—~738Automated safety check: PassNone
Live Researchbrightdata/skills264—~1.8kAutomated safety check: PassMIT
Eunomia Research Reporteunomia-bpf/eunomia.dev236—~3kAutomated safety check: PassMIT
Deep Research Notebooklmdavila7/claude-code-templates32k—~1.7kAutomated safety check: PassMIT
Researchiusztinpaul/ai-research-os-workshop179—~17kAutomated safety check: PassMIT
Source Grounded Research ReportNeuroAIHub/BrainPilot1.1k—~503Automated safety check: PassAGPL-3.0

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  • Live Research

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  • Eunomia Research Report

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  • Research

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Questions about Deep Research

What does Deep Research do?

Produce an in-depth, source-grounded research report. An agent skill from nateberkopec/dotfiles. Deep Research is an agent skill from nateberkopec/dotfiles. Produce an in-depth, source-grounded research report.

When should I use Deep Research?

Deep Research fits situations like: broad questions requiring multiple research threads; A cited report rather than a quick factual lookup.

How do I install Deep Research in Claude Code?

Run `npx skills add nateberkopec/dotfiles --skill deep-research -a claude-code`. Or copy the skill folder (files/home/.agents/skills/deep-research in nateberkopec/dotfiles) into .claude/skills/deep-research in your project. Claude Code loads it when a task matches its description.

How do I install Deep Research in Codex?

Run `npx skills add nateberkopec/dotfiles --skill deep-research -a codex`. Or copy the skill folder (files/home/.agents/skills/deep-research in nateberkopec/dotfiles) into .agents/skills/deep-research in your project. Codex loads it when a task matches its description.

Can I use Deep Research in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add nateberkopec/dotfiles --skill deep-research -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/deep-research, .gemini/skills/deep-research, .github/skills/deep-research and .opencode/skills/deep-research in your project.

What does Deep Research need to run?

SKILL.md names no scripts, command-line tools or credentials: Deep Research is instructions for the agent only.

Does Deep Research access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Deep Research safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Deep Research use?

No licence was found for Deep Research or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Deep Research use?

About 738 tokens (SKILL.md is roughly 3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.5k tokens, read only when the agent opens those files.

What are the alternatives to Deep Research?

Skills that share tags, products or a category with Deep Research: Live Research (brightdata/skills, 264 stars), Eunomia Research Report (eunomia-bpf/eunomia.dev, 236 stars), Deep Research Notebooklm (davila7/claude-code-templates, 32k stars) and Research (iusztinpaul/ai-research-os-workshop, 179 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Deep Research?

nateberkopec (a GitHub user) maintains it in nateberkopec/dotfiles, which has 147 GitHub stars. The repository holds 5 skills in this directory. The repository was last updated on October 9, 2026.

Source: nateberkopec/dotfiles on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.