Agent skill

Pp Retraction Checker

by mvanhorn in mvanhorn/printing-press-library

Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex.

Apache-2.0Auto-check: notesResearch & Science

Install Pp Retraction Checker

skills CLI
$ npx skills add mvanhorn/printing-press-library --skill pp-retraction-checker -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install mvanhorn/printing-press-library pp-retraction-checker --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/mvanhorn/printing-press-library.git skills-src && mkdir -p .claude/skills && cp -r skills-src/cli-skills/pp-retraction-checker .claude/skills/pp-retraction-checker && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
pp-retraction-checker
GitHub stars
2.1k
Token cost
~3.4k tokens
SKILL.md length
1,395 words
Files
1
Skills in repo
506
Repo updated
First seen
Licence
Apache-2.0

At a glance

Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex.

  • Works in 3 steps: Install via the Printing Press… → Verify: retraction-checker-pp-cli… → Ensure the reported install directory is…
  • Phrases: is this paper retracted
  • SKILL.md covers Prerequisites: Install the CLI, When to Use This CLI, Anti-triggers and Unique Capabilities, plus 12 more sections
  • Calls go, claude and npx

What it does

Pp Retraction Checker is an agent skill from mvanhorn/printing-press-library. Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex. Trigger phrases: is this paper retracted, check retraction, check this DOI, scan my bibliography for retractions, what replaced this retracted paper, use retraction-checker, run retraction-checker.

Its SKILL.md is about 3.4k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

It sits in Research & Science, covering Citation management and Academic paper search. The repository describes itself as: Official library of CLIs generated by the CLI Printing Press. Endorsed, tested, and community-contributed. The licence is Apache-2.0.

When your agent uses it

  • Phrases: is this paper retracted
  • Check retraction
  • Scan my bibliography for retractions
  • What replaced this retracted paper

Example prompts

  • “/pp-retraction-checker”

Requirements

  • Node.js
  • Pre-approved tools (allowed-tools): Read, Bash

Workflow steps

3 steps, taken from the first numbered list in SKILL.md.

  1. Install via the Printing Press installer. It defaults binaries to $HOME/.local/bin on macOS/Linux and…
  2. Verify: retraction-checker-pp-cli --version
  3. Ensure the reported install directory is on $PATH for the agent/runtime that will invoke this skill.

What it can do on your machine

Read from SKILL.md and the folder at commit d9a1696. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves these tools, so the agent can use them without asking each time:

    • Read
    • Bash

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Shell commands in SKILL.md call:

    • go
    • claude
    • npx

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    Links to these hosts (documentation or services it may open):

    • github.com

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Pp Retraction Checker loads about 3.4k tokens when it runs. Until then it costs about 88 tokens; SKILL.md has 1,395 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~88
When it runs · the whole SKILL.md, loaded when a task matches
~3.4k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check: notes

The automated check noted patterns worth knowing about, such as sudo or a known installer.

  • NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
    allowed-tools: Read, Bash

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from mvanhorn/printing-press-library at commit d9a1696, republished under its Apache-2.0 licence (© mvanhorn). 1,395 words, ~3,386 tokens.

Download SKILL.mdSave it as .claude/skills/pp-retraction-checker/SKILL.md (or your agent's skills folder).
name
pp-retraction-checker
description
Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex. Trigger phrases: `is this paper retracted`, `check retraction`, `check this DOI`, `scan my bibliography for retractions`, `what replaced this retracted paper`, `use retraction-checker`, `run retraction-checker`.
allowed-tools
Read, Bash
author
laci141
license
Apache-2.0
argument-hint
<command> [args] | install cli|mcp
<!-- GENERATED FILE — DO NOT EDIT.
     This file is a verbatim mirror of library/other/retraction-checker/SKILL.md,
     regenerated post-merge by tools/generate-skills/. Hand-edits here are
     silently overwritten on the next regen. Edit the library/ source instead.
     See the repository agent guide, section "Generated artifacts: registry.json, cli-skills/". -->

Retraction Checker — Printing Press CLI

Created by @laci141 (laci141). Contributors: @cathrynlavery (Cathryn Lavery).

check and scan report expressions of concern separately from retractions. A failed check --json lookup returns a nonzero status after printing its error verdict.

Prerequisites: Install the CLI

This skill drives the retraction-checker-pp-cli binary. You must verify the CLI is installed before invoking any command from this skill. If it is missing, install it first:

  1. Install via the Printing Press installer. It defaults binaries to $HOME/.local/bin on macOS/Linux and %LOCALAPPDATA%\Programs\PrintingPress\bin on Windows:
    bash
    npx -y @mvanhorn/printing-press-library install retraction-checker --cli-only
  2. Verify: retraction-checker-pp-cli --version
  3. Ensure the reported install directory is on $PATH for the agent/runtime that will invoke this skill.

If the npx install fails (no Node, offline, etc.), fall back to a direct Go install (requires Go 1.26.4 or newer). This installs into $GOPATH/bin (default $HOME/go/bin), so add that directory to $PATH instead:

bash
go install github.com/mvanhorn/printing-press-library/library/other/retraction-checker/cmd/retraction-checker-pp-cli@latest

If --version reports "command not found" after install, the runtime cannot see the binary directory on $PATH. Do not proceed with skill commands until verification succeeds.

Retraction Checker turns Crossref's embedded Retraction Watch data into a one-shot verdict: is this DOI or PMID retracted, when, why, and where is the notice. It batch-scans reading lists and .bib files, finds citation-ranked superseding research via OpenAlex, and watches a topic or library for newly-announced retractions. Fully keyless.

When to Use This CLI

Use this CLI when an agent or researcher needs to verify that a cited paper has not been retracted, audit a bibliography for retracted references, or find current research that supersedes a retracted study. It is the right choice for citation-integrity checks in literature reviews and RAG pipelines.

Anti-triggers

Do not use this CLI for:

  • Do not use this CLI to fetch full-text papers or PDFs
  • Do not use it for general scholarly search unrelated to retraction — use scientific-consensus for consensus and evidence analytics

Unique Capabilities

These capabilities aren't available in any other tool for this API.

Retraction intelligence
  • check — Tell whether a paper (by DOI or PMID) has been retracted, when, why, and where the notice is.

    Agents citing a paper should verify it is not retracted before relying on it.

    bash
    retraction-checker-pp-cli check 10.1016/j.micpro.2020.103768 --json
  • scan — Batch-check a reading list or .bib file and flag every retracted entry.

    Catches retracted citations across a whole manuscript or literature review at once.

    bash
    retraction-checker-pp-cli scan refs.bib --json
  • superseded — For a retracted or older paper, find related more-recent research on the same topic, ranked by citation count.

    When a paper is retracted, the agent still needs the current best evidence on the topic.

    bash
    retraction-checker-pp-cli superseded 10.1016/j.micpro.2020.103768 --json
Local state that compounds
  • watch — Monitor a topic or reading list for newly-announced retractions since the last run.

    Surfaces new retractions in a field or personal library without re-reading everything.

    bash
    retraction-checker-pp-cli watch "machine learning" --json

    The first run saves a checkpoint without fetching historical notices. Later runs check newly indexed records, including Retraction Watch additions. Existing config-directory checkpoints are imported into the current state path, including when a state override is set.

Command Reference

works — Manage works

  • retraction-checker-pp-cli works get — Get a single work by DOI
  • retraction-checker-pp-cli works search — Search or filter scholarly works
Finding the right command

When you know what you want to do but not which command does it, ask the CLI directly:

bash
retraction-checker-pp-cli which "<capability in your own words>"

which resolves a natural-language capability query to the best matching command from this CLI's curated feature index. Exit code 0 means at least one match; exit code 2 means no confident match — fall back to --help or use a narrower query.

Recipes

Check a DOI
bash
retraction-checker-pp-cli check 10.1016/j.micpro.2020.103768 --json

Returns retraction status, date, reason source, and notice reference for one paper.

Audit a bibliography
bash
retraction-checker-pp-cli scan reading-list.txt --agent --select doi,retracted,reason

Scans one DOI/PMID per line and returns only the key retraction fields for each entry.

Find superseding work
bash
retraction-checker-pp-cli superseded 10.1016/j.micpro.2020.103768 --json

Lists more-recent related papers ranked by citations, published after the retracted paper.

Watch a field
bash
retraction-checker-pp-cli watch "crispr" --json

Baselines retraction notices for a topic and reports new ones on later runs.

Auth Setup

No authentication required.

Run retraction-checker-pp-cli doctor to verify setup.

Agent Mode

Add --agent to any command. Expands to: --json --compact --no-input --no-color --yes.

  • Pipeable — JSON on stdout, errors on stderr

  • Filterable — --select keeps a subset of fields. Dotted paths descend into nested structures; arrays traverse element-wise. Critical for keeping context small on verbose APIs:

    bash
    retraction-checker-pp-cli works get mock-value --agent --select id,name,status
  • Previewable — --dry-run shows the request without sending

  • Offline-friendly — sync/search commands can use the local SQLite store when available

  • Non-interactive — never prompts, every input is a flag

  • Read-only — do not use this CLI for create, update, delete, publish, comment, upvote, invite, order, send, or other mutating requests

Response envelope

Commands that read from the local store or the API wrap output in a provenance envelope:

json
{
  "meta": {"source": "live" | "local", "synced_at": "...", "reason": "..."},
  "results": <data>
}

Parse .results for data and .meta.source to know whether it's live or local. A human-readable N results (live) summary is printed to stderr only when stdout is a terminal AND no machine-format flag (--json, --csv, --compact, --quiet, --plain, --select) is set — piped/agent consumers and explicit-format runs get pure JSON on stdout.

Show full SKILL.md (618 more words)Show less

Paths and state

Agents should treat the CLI's path resolver as part of the runtime contract:

  • Use --home <dir> for one invocation, or set RETRACTION_CHECKER_HOME=<dir> to relocate all four path kinds under one root.

  • Use per-kind env vars only when a specific kind must diverge: RETRACTION_CHECKER_CONFIG_DIR, RETRACTION_CHECKER_DATA_DIR, RETRACTION_CHECKER_STATE_DIR, RETRACTION_CHECKER_CACHE_DIR.

  • Resolution order is per-kind env var, --home, RETRACTION_CHECKER_HOME, XDG (XDG_CONFIG_HOME, XDG_DATA_HOME, XDG_STATE_HOME, XDG_CACHE_HOME), then platform defaults.

  • config contains settings like config.toml and profiles. data contains credentials.toml, data.db, cookies, and auth sidecars. state contains persisted queries, jobs, and teach.log. cache contains regenerable HTTP/cache files.

  • Stored secrets live in credentials.toml under the data dir. Existing legacy config.toml secrets are read for compatibility and leave config.toml on the first auth write.

  • Run retraction-checker-pp-cli doctor --fail-on warn to surface path and credential-location warnings. agent-context exposes a schema v4 paths block for agents that need the resolved dirs.

  • For MCP, pass relocation through the MCP host config. The MCP binary does not inherit CLI flags:

    json
    {
      "mcpServers": {
        "retraction-checker": {
          "command": "retraction-checker-pp-mcp",
          "env": {
            "RETRACTION_CHECKER_HOME": "/srv/retraction-checker"
          }
        }
      }
    }

Fleet precedence: an inherited per-kind env var overrides an explicit --home for that kind. Use RETRACTION_CHECKER_HOME or per-kind vars as durable fleet levers, and use --home only for a single invocation. Relocation is not reversible by unsetting env vars; move files manually before clearing RETRACTION_CHECKER_HOME, or doctor will not find credentials left under the former root.

Agent Feedback

When you (or the agent) notice something off about this CLI, record it:

retraction-checker-pp-cli feedback "the --since flag is inclusive but docs say exclusive"
retraction-checker-pp-cli feedback --stdin < notes.txt
retraction-checker-pp-cli feedback list --json --limit 10

Entries are stored locally as feedback.jsonl under the resolved data dir. They are never POSTed unless RETRACTION_CHECKER_FEEDBACK_ENDPOINT is set AND either --send is passed or RETRACTION_CHECKER_FEEDBACK_AUTO_SEND=true. Default behavior is local-only.

Write what surprised you, not a bug report. Short, specific, one line: that is the part that compounds.

Output Delivery

Every command accepts --deliver <sink>. The output goes to the named sink in addition to (or instead of) stdout, so agents can route command results without hand-piping. Three sinks are supported:

SinkEffect
stdoutDefault; write to stdout only
file:<path>Atomically write output to <path> (tmp + rename)
webhook:<url>POST the output body to the URL (application/json or application/x-ndjson when --compact)

Unknown schemes are refused with a structured error naming the supported set. Webhook failures return non-zero and log the URL + HTTP status on stderr.

Named Profiles

A profile is a saved set of flag values, reused across invocations. Use it when a scheduled agent calls the same command every run with the same configuration - HeyGen's "Beacon" pattern.

retraction-checker-pp-cli profile save briefing --json
retraction-checker-pp-cli --profile briefing works get mock-value
retraction-checker-pp-cli profile list --json
retraction-checker-pp-cli profile show briefing
retraction-checker-pp-cli profile delete briefing --yes

Explicit flags always win over profile values; profile values win over defaults. agent-context lists all available profiles under available_profiles so introspecting agents discover them at runtime.

Exit Codes

CodeMeaning
0Success
2Usage error (wrong arguments)
3Resource not found
5API error (upstream issue)
7Rate limited (wait and retry)
10Config error

Argument Parsing

Parse $ARGUMENTS:

  1. Empty, help, or --help → show retraction-checker-pp-cli --help output
  2. Starts with install → ends with mcp → MCP installation; otherwise → see Prerequisites above
  3. Anything else → Direct Use (execute as CLI command with --agent)

MCP Server Installation

  1. Install the MCP server:
    bash
    go install github.com/mvanhorn/printing-press-library/library/other/retraction-checker/cmd/retraction-checker-pp-mcp@latest
  2. Register with Claude Code:
    bash
    claude mcp add retraction-checker-pp-mcp -- retraction-checker-pp-mcp
  3. Verify: claude mcp list

The default MCP transport is stdio. For local HTTP, run retraction-checker-pp-mcp --transport http; its default bind is 127.0.0.1:7777. The server refuses hostnames and non-loopback addresses because it has no remote HTTP authentication.

Direct Use

  1. Check if installed: which retraction-checker-pp-cli If not found, offer to install (see Prerequisites at the top of this skill).
  2. Match the user query to the best command from the Unique Capabilities and Command Reference above.
  3. Execute with the --agent flag:
    bash
    retraction-checker-pp-cli <command> [subcommand] [args] --agent
  4. If ambiguous, drill into subcommand help: retraction-checker-pp-cli <command> --help.

© mvanhorn, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file

Files

Just SKILL.md in cli-skills/pp-retraction-checker of mvanhorn/printing-press-library.

Open the folder on GitHubat commit d9a1696

Compare with similar skills

Pp Retraction Checker next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Pp Retraction Checker compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Pp Retraction Checker this skillmvanhorn/printing-press-library2.1k—~3.4kAutomated safety check: NotesApache-2.0
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Openalex Databaseneflibata-feng/MyArxiv-Agent12612 repos~3kAutomated safety check: PassCustom licence
Citation ManagementK-Dense-AI/claude-scientific-writer2.4k2 repos~3.9kAutomated safety check: NotesMIT
Preprint Search on bioRxivLigphiDonk/Oh-my--paper73912 repos~3.7kAutomated safety check: PassMIT
Citation Managementneflibata-feng/MyArxiv-Agent12619 repos~8.1kAutomated safety check: NotesMIT

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Questions about Pp Retraction Checker

What does Pp Retraction Checker do?

Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex. Pp Retraction Checker is an agent skill from mvanhorn/printing-press-library. Check whether a paper is retracted, why, and what the current research says now — keyless, over Crossref and OpenAlex.

When should I use Pp Retraction Checker?

Pp Retraction Checker fits situations like: phrases: is this paper retracted; check retraction; scan my bibliography for retractions; what replaced this retracted paper.

How do I install Pp Retraction Checker in Claude Code?

Run `npx skills add mvanhorn/printing-press-library --skill pp-retraction-checker -a claude-code`. Or copy the skill folder (cli-skills/pp-retraction-checker in mvanhorn/printing-press-library) into .claude/skills/pp-retraction-checker in your project. Claude Code loads it when a task matches its description.

How do I install Pp Retraction Checker in Codex?

Run `npx skills add mvanhorn/printing-press-library --skill pp-retraction-checker -a codex`. Or copy the skill folder (cli-skills/pp-retraction-checker in mvanhorn/printing-press-library) into .agents/skills/pp-retraction-checker in your project. Codex loads it when a task matches its description.

Can I use Pp Retraction Checker in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add mvanhorn/printing-press-library --skill pp-retraction-checker -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/pp-retraction-checker, .gemini/skills/pp-retraction-checker, .github/skills/pp-retraction-checker and .opencode/skills/pp-retraction-checker in your project.

What does Pp Retraction Checker need to run?

Going by SKILL.md and its folder, Pp Retraction Checker needs the command-line tools its instructions call (go, claude and npx). Our summary lists: Node.js. Its frontmatter pre-approves these tools: Read, Bash.

Does Pp Retraction Checker access the network?

SKILL.md names 1 domain. As links in the text: github.com. This is read from the text; nothing was executed.

Is Pp Retraction Checker safe to install?

Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.

What licence does Pp Retraction Checker use?

Pp Retraction Checker is published under the Apache-2.0 licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Pp Retraction Checker use?

About 3.4k tokens (SKILL.md is roughly 14k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Pp Retraction Checker?

Skills that share tags, products or a category with Pp Retraction Checker: Literature Review (neflibata-feng/MyArxiv-Agent, 126 stars), Openalex Database (neflibata-feng/MyArxiv-Agent, 126 stars), Citation Management (K-Dense-AI/claude-scientific-writer, 2.4k stars) and Preprint Search on bioRxiv (LigphiDonk/Oh-my--paper, 739 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Pp Retraction Checker?

mvanhorn (a GitHub user) maintains it in mvanhorn/printing-press-library, which has 2,056 GitHub stars. The repository holds 506 skills in this directory. The repository was last updated on October 9, 2026.

Source: mvanhorn/printing-press-library on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.