Iron Proxy Gateway for NanoClaw
nanocoai/nanoclaw
Installs or refreshes Iron Proxy and its Iron Control web console for NanoClaw, with a local Docker setup, database, credentials and a human approval bridge.
A skill your agent uses when running any ODK-backed command in this repo — owltools, robot, make NORM, robot verify, or any other tool that lives inside the ODK docker image
Install Odk
$ npx skills add monarch-initiative/mondo --skill odk -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install monarch-initiative/mondo odk --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/odk .claude/skills/odk && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .claude/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odkType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add monarch-initiative/mondo --skill odk -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install monarch-initiative/mondo odk --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/odk .agents/skills/odk && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .agents/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add monarch-initiative/mondo --skill odk -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install monarch-initiative/mondo odk --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/odk .cursor/skills/odk && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .cursor/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/monarch-initiative/mondo.git --path .claude/skills/odk--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add monarch-initiative/mondo --skill odk -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install monarch-initiative/mondo odk --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/odk .gemini/skills/odk && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .gemini/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install monarch-initiative/mondo odkInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add monarch-initiative/mondo --skill odk -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/odk .github/skills/odk && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .github/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add monarch-initiative/mondo --skill odk -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install monarch-initiative/mondo odk --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/monarch-initiative/mondo.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/odk .opencode/skills/odk && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "odk" agent skill from https://github.com/monarch-initiative/mondo/tree/master/.claude/skills/odk into .opencode/skills/odk/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "odk", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
odk- GitHub stars
- 326
- Token cost
- ~757 tokens
- SKILL.md length
- 315 words
- Files
- 1
- Skills in repo
- 4
- Repo updated
- First seen
- Licence
- CC-BY-4.0
At a glance
A skill your agent uses when running any ODK-backed command in this repo — owltools, robot, make NORM, robot verify, or any other tool that lives inside the ODK docker image
- Running any ODK-backed command in this repo — owltools
- SKILL.md covers TL;DR, When you have a TTY…, When you don't have a TTY… and Reading the right image tag, plus 2 more sections
- Calls sh, docker and make
- Any other tool that lives inside the ODK docker image
What it does
Odk is an agent skill from monarch-initiative/mondo. Use when running any ODK-backed command in this repo — owltools, robot, make NORM, robot verify, or any other tool that lives inside the ODK docker image
Its SKILL.md is about 760 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in DevOps & Cloud, covering Containers. It works with Docker. The repository describes itself as: Mondo Disease Ontology. The licence is CC-BY-4.0.
When your agent uses it
- Running any ODK-backed command in this repo — owltools
- Any other tool that lives inside the ODK docker image
Example prompts
- “/odk”
Requirements
- Docker
What it can do on your machine
Read from SKILL.md and the folder at commit 9bfccbe. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Shell commands in SKILL.md call:
shdockermake
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use docker, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Odk loads about 757 tokens when it runs. Until then it costs about 39 tokens; SKILL.md has 315 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from monarch-initiative/mondo at commit 9bfccbe, republished under its CC-BY-4.0 licence (© monarch-initiative). 315 words, ~757 tokens.
Download SKILL.mdSave it as
.claude/skills/odk/SKILL.md (or your agent's skills folder).- name
- odk
- description
- Use when running any ODK-backed command in this repo — owltools, robot, make NORM, robot verify, or any other tool that lives inside the ODK docker image
Running ODK commands in this repo
TL;DR
src/ontology/run.sh is the official wrapper, but it ends in docker run -ti so it fails silently in any non-TTY context (Claude Code, CI, non-interactive shells) with the input device is not a TTY and exits without running the command.
If you have a TTY, prefer run.sh. If you don't, call docker directly with -i only.
When you have a TTY (interactive terminal)
cd src/ontology && sh run.sh <command> <args...>Examples:
sh run.sh make NORM
sh run.sh owltools --use-catalog mondo-edit.obo --obsolete-replace MONDO:A MONDO:B -o -f obo mondo-edit.obo
sh run.sh robot verify --catalog catalog-v001.xml -i mondo-edit.obo --queries ../sparql/qc/general/qc-foo.sparql -O reports/When you don't have a TTY (Claude Code, CI, scripts)
Symptom: sh run.sh <anything> prints the input device is not a TTY and exits with no further output, no file changes.
Workaround — invoke docker directly using the same image and mounts as run.sh, but with -i only:
docker run --memory=8g \
-v /ABSOLUTE/PATH/TO/REPO:/work \
-w /work/src/ontology \
-e ROBOT_JAVA_ARGS=-Xmx8G -e JAVA_OPTS=-Xmx8G \
--rm -i obolibrary/odkfull:<TAG-FROM-RUN.SH> \
<command> <args...>Where:
/ABSOLUTE/PATH/TO/REPO= the repo root (the parent ofsrc/).<TAG-FROM-RUN.SH>= whatever tag is set inIMAGE=insrc/ontology/run.sh. Always readrun.shfirst to look up the current tag — do not hardcodev1.6or any other version.
Reading the right image tag
Don't memorize the version. The line in run.sh is the source of truth:
grep '^IMAGE=' src/ontology/run.sh
# IMAGE=${IMAGE:-odkfull:v1.6}Common ODK commands you'll need
| What | Command body (after run.sh or after the docker run ... -i obolibrary/odkfull:<TAG> prefix) |
|---|---|
| Normalize edit file | make NORM then mv NORM mondo-edit.obo (run from src/ontology) |
| Convert / syntax check | robot convert --catalog catalog-v001.xml -i mondo-edit.obo -f obo -o mondo-edit.TMP.obo |
| Run a QC query | robot verify --catalog catalog-v001.xml -i mondo-edit.obo --queries ../sparql/qc/general/qc-X.sparql -O reports/ |
| Merge / obsolete with replacement | owltools --use-catalog mondo-edit.obo --obsolete-replace MONDO:A MONDO:B -o -f obo mondo-edit.obo |
Notes
- All ODK commands assume CWD is
src/ontology/. make NORMwrites to a file calledNORMinsrc/ontology/. You mustmv NORM mondo-edit.oboafterward.robot verifyexits non-zero on QC failures and writes one TSV per failing query under-O reports/. Empty exit +PASS Rule ... 0 violation(s)= clean.- If
run.shreportsthe input device is not a TTY, do not retry the same command — it will keep failing. Switch to the docker-direct invocation.
© monarch-initiative, CC-BY-4.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in .claude/skills/odk of monarch-initiative/mondo.
Open the folder on GitHubat commit 9bfccbe
Compare with similar skills
Odk next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Odk this skillmonarch-initiative/mondo | 326 | — | ~757 | Automated safety check: Pass | CC-BY-4.0 | |
| Iron Proxy Gateway for NanoClawnanocoai/nanoclaw | 31k | — | ~4.6k | Automated safety check: Notes | MIT | |
| GreptimeDB Dev Docker ImageGreptimeTeam/greptimedb | 6.7k | — | ~4k | Automated safety check: Notes | Apache-2.0 | |
| Senior DevOps Toolkitmaslennikov-ig/claude-code-orchestrator-kit | 260 | 6 repos | ~1.1k | Automated safety check: Notes | Custom licence | |
| LangBot Deployment Guidelangbot-app/LangBot | 18k | — | ~1.5k | Automated safety check: Notes | Apache-2.0 | |
| Build Openshell Mxc WindowsNVIDIA/OpenShell | 16k | — | ~4.9k | Automated safety check: Pass | Apache-2.0 |
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More from monarch-initiative/mondo
Merge Terms
monarch-initiative/mondo
A skill your agent uses when asked to merge two MONDO terms — obsoleting one and transferring its metadata to the surviving term
Analyse Issue
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Related
Works with
Categories
Questions about Odk
What does Odk do?
A skill your agent uses when running any ODK-backed command in this repo — owltools, robot, make NORM, robot verify, or any other tool that lives inside the ODK docker image. Odk is an agent skill from monarch-initiative/mondo.
When should I use Odk?
Odk fits situations like: running any ODK-backed command in this repo — owltools; any other tool that lives inside the ODK docker image.
How do I install Odk in Claude Code?
Run `npx skills add monarch-initiative/mondo --skill odk -a claude-code`. Or copy the skill folder (.claude/skills/odk in monarch-initiative/mondo) into .claude/skills/odk in your project. Claude Code loads it when a task matches its description.
How do I install Odk in Codex?
Run `npx skills add monarch-initiative/mondo --skill odk -a codex`. Or copy the skill folder (.claude/skills/odk in monarch-initiative/mondo) into .agents/skills/odk in your project. Codex loads it when a task matches its description.
Can I use Odk in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add monarch-initiative/mondo --skill odk -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/odk, .gemini/skills/odk, .github/skills/odk and .opencode/skills/odk in your project.
What does Odk need to run?
Going by SKILL.md and its folder, Odk needs the command-line tools its instructions call (sh, docker and make). Our summary lists: Docker.
Does Odk access the network?
SKILL.md contains no URLs. Its commands use docker, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Is Odk safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Odk use?
Odk is published under the CC-BY-4.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Odk use?
About 757 tokens (SKILL.md is roughly 3k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Odk?
Skills that share tags, products or a category with Odk: Iron Proxy Gateway for NanoClaw (nanocoai/nanoclaw, 31k stars), GreptimeDB Dev Docker Image (GreptimeTeam/greptimedb, 6.7k stars), Senior DevOps Toolkit (maslennikov-ig/claude-code-orchestrator-kit, 260 stars) and LangBot Deployment Guide (langbot-app/LangBot, 18k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Odk?
monarch-initiative (a GitHub organization) maintains it in monarch-initiative/mondo, which has 326 GitHub stars. The repository holds 4 skills in this directory. The repository was last updated on October 9, 2026.
Source: monarch-initiative/mondo on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.