Mathmodel Skill
handsomeZR-netizen/mathmodel-skill
Plugin shim for the mathmodel-skill competition workflow. An agent skill from handsomeZR-netizen/mathmodel-skill.
Orchestrates a research paper from literature review through code, experiments, figures, tables, writing and review, with state passed between phases and checkpoints to resume.
Install Paper Pipeline Assembly
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install lingzhi227/agent-research-skills paper-assembly --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/paper-assembly .claude/skills/paper-assembly && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .claude/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assemblyType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install lingzhi227/agent-research-skills paper-assembly --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/paper-assembly .agents/skills/paper-assembly && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .agents/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install lingzhi227/agent-research-skills paper-assembly --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/paper-assembly .cursor/skills/paper-assembly && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .cursor/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/lingzhi227/agent-research-skills.git --path skills/paper-assembly--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install lingzhi227/agent-research-skills paper-assembly --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/paper-assembly .gemini/skills/paper-assembly && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .gemini/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install lingzhi227/agent-research-skills paper-assemblyInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/paper-assembly .github/skills/paper-assembly && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .github/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install lingzhi227/agent-research-skills paper-assembly --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/lingzhi227/agent-research-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/paper-assembly .opencode/skills/paper-assembly && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "paper-assembly" agent skill from https://github.com/lingzhi227/agent-research-skills/tree/main/skills/paper-assembly into .opencode/skills/paper-assembly/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "paper-assembly", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
paper-assembly- GitHub stars
- 390
- Token cost
- ~971 tokens
- SKILL.md length
- 328 words
- Files
- 3 (incl. scripts, references)
- Skills in repo
- 31
- Repo updated
- First seen
- Licence
- None found
At a glance
Orchestrates a research paper from literature review through code, experiments, figures, tables, writing and review, with state passed between phases and checkpoints to resume.
- Works in 5 steps: Assess Current State → Execute Pipeline Phases → State Propagation → …
- Assembling a complete paper from separately produced components
- SKILL.md covers Input, References, Scripts and Workflow, plus 4 more sections
- Runs Python scripts from its folder; calls python
What it does
The skill coordinates the other paper skills in dependency order: literature search and review, research planning, experiment code, experiment design, figure and table generation, section writing, citation management, LaTeX formatting, compilation and self-review. It begins by scanning the paper directory to see which phases are complete or pending and builds a dependency graph of the remaining work.
After each phase it saves artifacts, passes results to downstream phases and updates a progress checkpoint file so an interrupted run can resume. Quality gates between phases check that required outputs exist, cited keys are in the .bib file and figures and tables match the experimental results, and final assembly merges sections into main.tex, checks included graphics and cite keys, compiles a PDF and runs a self-review. A Python script, assembly_checker.py, reports missing artifacts and suggests next steps, and a reference file describes orchestration patterns such as sequential pipelines and multi-agent state broadcasting.
When your agent uses it
- Assembling a complete paper from separately produced components
- Finding out which phases of a paper project are done and which are pending
- Resuming an interrupted paper pipeline from a checkpoint
Example prompts
- “Check the paper/ directory and tell me which pipeline phases are still missing.”
- “Assemble the full paper from the current results, figures and sections, then compile the PDF.”
- “Resume the paper pipeline from the last checkpoint and run the quality gates.”
Requirements
- Python, to run assembly_checker.py
- A LaTeX toolchain to compile the PDF
Workflow steps
5 steps, taken from the step headings in SKILL.md.
- Assess Current State
- Execute Pipeline Phases
- State Propagation
- Quality Gates
- Final Assembly
What it can do on your machine
Read from SKILL.md and the folder at commit 9e6c085. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships 1 file in scripts/ (Python), which the agent can run.
Shell commands in SKILL.md call:
python
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Paper Pipeline Assembly loads about 971 tokens when it runs, and up to ~2.5k if it reads all its reference files. Until then it costs about 68 tokens; SKILL.md has 328 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 328 words (~971 tokens).
“Orchestrate the entire paper pipeline end-to-end with state management and checkpointing.”
- name
- paper-assembly
- argument-hint
- paper-directory
Files
SKILL.md and 2 other files (scripts, references) in skills/paper-assembly of lingzhi227/agent-research-skills.
- SKILL.md
- references/orchestration-patterns.md
- scripts/assembly_checker.py
Open the folder on GitHubat commit 9e6c085
Compare with similar skills
Paper Pipeline Assembly next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Paper Pipeline Assembly this skilllingzhi227/agent-research-skills | 390 | — | ~971 | Automated safety check: Pass | None | |
| Mathmodel SkillhandsomeZR-netizen/mathmodel-skill | 292 | — | ~197 | Automated safety check: Pass | MIT | |
| MCM/ICM Autonomous Modeling AgentRealSeaberry/AutoMCM-Pro | 257 | — | ~2.8k | Automated safety check: Pass | MIT | |
| Modeling Code and Result Contractsyushui2022/MathModel-Skill | 454 | — | ~1.4k | Automated safety check: Pass | MIT | |
| LaTeX Research PostersK-Dense-AI/claude-scientific-writer | 2.4k | 12 repos | ~4.1k | Automated safety check: Notes | MIT | |
| AutoMCM Math Modeling AgentRealSeaberry/AutoMCM-Pro | 257 | — | ~2.3k | Automated safety check: Pass | MIT |
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Related
Categories
Questions about Paper Pipeline Assembly
What does Paper Pipeline Assembly do?
Orchestrates a research paper from literature review through code, experiments, figures, tables, writing and review, with state passed between phases and checkpoints to resume. The skill coordinates the other paper skills in dependency order: literature search and review, research planning, experiment code, experiment design, figure and table generation, section writing, citation management, LaTeX formatting, compilation and self-review. It begins by scanning the paper directory to see which phases are complete or pending and builds a dependency graph of the remaining work.
When should I use Paper Pipeline Assembly?
Paper Pipeline Assembly fits situations like: assembling a complete paper from separately produced components; finding out which phases of a paper project are done and which are pending; resuming an interrupted paper pipeline from a checkpoint.
How do I install Paper Pipeline Assembly in Claude Code?
Run `npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a claude-code`. Or copy the skill folder (skills/paper-assembly in lingzhi227/agent-research-skills) into .claude/skills/paper-assembly in your project. Claude Code loads it when a task matches its description.
How do I install Paper Pipeline Assembly in Codex?
Run `npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a codex`. Or copy the skill folder (skills/paper-assembly in lingzhi227/agent-research-skills) into .agents/skills/paper-assembly in your project. Codex loads it when a task matches its description.
Can I use Paper Pipeline Assembly in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add lingzhi227/agent-research-skills --skill paper-assembly -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/paper-assembly, .gemini/skills/paper-assembly, .github/skills/paper-assembly and .opencode/skills/paper-assembly in your project.
What does Paper Pipeline Assembly need to run?
Going by SKILL.md and its folder, Paper Pipeline Assembly needs Python for the scripts in its folder and the command-line tools its instructions call (python). Our summary lists: Python, to run assembly_checker.py; A LaTeX toolchain to compile the PDF.
Does Paper Pipeline Assembly access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Paper Pipeline Assembly safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
What licence does Paper Pipeline Assembly use?
No licence was found for Paper Pipeline Assembly or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Paper Pipeline Assembly use?
About 971 tokens (SKILL.md is roughly 3.9k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 1.5k tokens, read only when the agent opens those files.
What are the alternatives to Paper Pipeline Assembly?
Skills that share tags, products or a category with Paper Pipeline Assembly: Mathmodel Skill (handsomeZR-netizen/mathmodel-skill, 292 stars), MCM/ICM Autonomous Modeling Agent (RealSeaberry/AutoMCM-Pro, 257 stars), Modeling Code and Result Contracts (yushui2022/MathModel-Skill, 454 stars) and LaTeX Research Posters (K-Dense-AI/claude-scientific-writer, 2.4k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Paper Pipeline Assembly?
lingzhi227 (a GitHub user) maintains it in lingzhi227/agent-research-skills, which has 390 GitHub stars. The repository holds 31 skills in this directory. The repository was last updated on February 27, 2026.
Source: lingzhi227/agent-research-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.