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sickn33/agentic-awesome-skills
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Computes electron-phonon coupling to calculate temperature-dependent bandgap renormalization using atomate2.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phonon --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/mat-dft-electron-phonon .claude/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .claude/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phononType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phonon --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/mat-dft-electron-phonon .agents/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .agents/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phonon --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/mat-dft-electron-phonon .cursor/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .cursor/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/learningmatter-mit/AtomisticSkills.git --path skills/mat-dft-electron-phonon--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phonon --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/mat-dft-electron-phonon .gemini/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .gemini/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phononInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/mat-dft-electron-phonon .github/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .github/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-dft-electron-phonon --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/mat-dft-electron-phonon .opencode/skills/mat-dft-electron-phonon && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "mat-dft-electron-phonon" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-dft-electron-phonon into .opencode/skills/mat-dft-electron-phonon/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-dft-electron-phonon", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
mat-dft-electron-phononComputes electron-phonon coupling to calculate temperature-dependent bandgap renormalization using atomate2.
Mat Dft Electron Phonon is an agent skill from learningmatter-mit/AtomisticSkills. Computes electron-phonon coupling to calculate temperature-dependent bandgap renormalization using atomate2.
Its SKILL.md is about 770 tokens, which your agent loads only when the skill is triggered. The skill folder holds 6 other files, including scripts (for example `examples/silicon/README.md`, `examples/silicon/si_flow.json` and `scripts/generate_inputs.py`).
The repository describes itself as: Integrating AtomisticSkills into Agentic IDEs (Cursor, Claude Code, Codex, Google Antigravity, Hermes Agent, etc). The licence is MIT.
3 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 6257444. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships 1 file in scripts/ (Python), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
doi.orggithub.comFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Mat Dft Electron Phonon loads about 768 tokens when it runs. Until then it costs about 33 tokens; SKILL.md has 302 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
The full file from learningmatter-mit/AtomisticSkills at commit 6257444, republished under its MIT licence (© learningmatter-mit). 302 words, ~768 tokens.
.claude/skills/mat-dft-electron-phonon/SKILL.md (or your agent's skills folder). This skill also uses 3 other files; get the full folder from GitHub.To determine the impact of electron-phonon coupling on the electronic eigenstates of a solid. At $T=0$ K, quantum fluctuations (zero-point motion) slightly perturb the geometric symmetry of a perfectly static lattice, causing a contraction known as zero-point renormalization (ZPR). As temperature increases, higher phonon modes dictate further eigenenergy shifts.
Standard DFT predicts bandgaps under the Born-Oppenheimer limit (fixed infinite massive ions). Computing true temperature-dependent optical properties (photoluminescence shifting, exciton broadening) mandates adding back the phonon response. The ElectronPhononMaker calculates phonon modes first (via phonopy), generates properly thermalized stochastic structural snapshots respecting the true classical/quantum Bose-Einstein occupancies, and computes the static gap for each snapshot.
Generating the inputs uses the ElectronPhononMaker. You only need to provide the target primitive structure and the temperature list you want dynamically sampled.
${CLAUDE_SKILL_DIR}/../../venv/run cpu python ${CLAUDE_SKILL_DIR}/scripts/generate_inputs.py --output elph_flow.jsonThe default script serializes the Directed Acyclic Graph (DAG) logic. Because calculating robust phonon displacements involves constructing potentially hundreds of large supercell single-point DFT calculations, ensure you map this to an established HPC worker infrastructure (jobflow or Fireworks) rather than executing interactively locally.
The termination node evaluates the mean and variance of the bandgap/band edges from all stochastically distributed geometric snapshots at a given temperature, returning the renormalized gap.
Run the DAG generation for pristine primitive Silicon.
cd ${CLAUDE_SKILL_DIR}/examples/silicon
${CLAUDE_SKILL_DIR}/../../venv/run cpu python ../../scripts/generate_inputs.py --output si_flow.jsoncpu environment, which contains phonopy.supercell_matrix) to capture long-wavelength phonons correctly.Author: Bowen Deng Contact: GitHub
© learningmatter-mit, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 3 other files (scripts) in skills/mat-dft-electron-phonon of learningmatter-mit/AtomisticSkills.
Open the folder on GitHubat commit 6257444
Mat Dft Electron Phonon next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Mat Dft Electron Phonon this skilllearningmatter-mit/AtomisticSkills | 176 | — | ~768 | Automated safety check: Pass | MIT | |
| Dependency Scanningsickn33/agentic-awesome-skills | 47k | 1 repos | ~2.4k | Automated safety check: Pass | MIT | |
| Dependency Checkruvnet/ruflo | 74k | — | ~258 | Automated safety check: Pass | MIT | |
| Ito Computeaffaan-m/ECC | 275k | 1 repos | ~1.7k | Automated safety check: Pass | MIT | |
| Dependency Updatecodewhale-hq/Codewhale | 41k | — | ~142 | Automated safety check: Pass | MIT | |
| Bump Sentry Dependencygetsentry/sentry | 46k | — | ~815 | Automated safety check: Pass | Custom licence |
sickn33/agentic-awesome-skills
Scan package dependencies for known vulnerabilities using Snyk, Dependabot, and OWASP Dependency-Check.
ruvnet/ruflo
Scan project dependencies for known vulnerabilities and CVEs.
affaan-m/ECC
Query live GPU inventory, submit an authenticated Itô fixed-rate RFQ, inspect RFQ or procurement status, revoke device credentials, and run explicitly gated node qualification through the separately…
codewhale-hq/Codewhale
Read release notes/changelogs, update a defined dependency scope, handle breaking changes, and verify.
getsentry/sentry
Bumps an existing Python dependency in getsentry/sentry through the repository's self-serve GitHub Actions workflow.
logseq/logseq
Audit, plan, and refresh dependency upgrades for the Logseq repository by scanning every non-gitignored package.json, deps.edn, bb.edn and nbb.edn manifest, checking latest upstream versions…
learningmatter-mit/AtomisticSkills
Define a docking search box (center coordinates + box dimensions in Angstroms) from a co-crystal ligand, binding-site residues, or a saved JSON specification.
learningmatter-mit/AtomisticSkills
Build a solvated, charge-neutralized protein-ligand complex for OpenMM molecular dynamics simulation.
learningmatter-mit/AtomisticSkills
Identify and rank ligandable pockets on a protein structure or model using geometry (fpocket) or an ML predictor (P2Rank).
learningmatter-mit/AtomisticSkills
Calculate homolytic and heterolytic bond dissociation energies (BDEs) for all single bonds in a molecule using MLIPs with RDKit fragmentation.
learningmatter-mit/AtomisticSkills
Generate molecular conformers with RDKit ETKDG, relax with MLIPs, and rank by energy with Boltzmann weighting.
learningmatter-mit/AtomisticSkills
Query multiple MOF databases (QMOF via MPContribs; ARC-MOF DB7/Majumdar et al.
Computes electron-phonon coupling to calculate temperature-dependent bandgap renormalization using atomate2. Mat Dft Electron Phonon is an agent skill from learningmatter-mit/AtomisticSkills. Computes electron-phonon coupling to calculate temperature-dependent bandgap renormalization using atomate2.
Run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a claude-code`. Or copy the skill folder (skills/mat-dft-electron-phonon in learningmatter-mit/AtomisticSkills) into .claude/skills/mat-dft-electron-phonon in your project. Claude Code loads it when a task matches its description.
Run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a codex`. Or copy the skill folder (skills/mat-dft-electron-phonon in learningmatter-mit/AtomisticSkills) into .agents/skills/mat-dft-electron-phonon in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-dft-electron-phonon -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/mat-dft-electron-phonon, .gemini/skills/mat-dft-electron-phonon, .github/skills/mat-dft-electron-phonon and .opencode/skills/mat-dft-electron-phonon in your project.
Going by SKILL.md and its folder, Mat Dft Electron Phonon needs Python for the scripts in its folder. Our summary lists: Python 3.
SKILL.md names 2 domains. As links in the text: doi.org and github.com. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
Mat Dft Electron Phonon is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 768 tokens (SKILL.md is roughly 3.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Mat Dft Electron Phonon: Dependency Scanning (sickn33/agentic-awesome-skills, 47k stars), Dependency Check (ruvnet/ruflo, 74k stars), Ito Compute (affaan-m/ECC, 275k stars) and Dependency Update (codewhale-hq/Codewhale, 41k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
learningmatter-mit (a GitHub organization) maintains it in learningmatter-mit/AtomisticSkills, which has 176 GitHub stars. The repository holds 129 skills in this directory. The repository was last updated on October 7, 2026.
Source: learningmatter-mit/AtomisticSkills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.