Dependency Scanning
sickn33/agentic-awesome-skills
Scan package dependencies for known vulnerabilities using Snyk, Dependabot, and OWASP Dependency-Check.
Calculate temperature-dependent thermodynamic properties like Equilibrium Phase Fractions for a specific alloy composition using CALPHAD models.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagram --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/mat-calphad-property-diagram .claude/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .claude/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagramType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagram --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/mat-calphad-property-diagram .agents/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .agents/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagram --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/mat-calphad-property-diagram .cursor/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .cursor/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/learningmatter-mit/AtomisticSkills.git --path skills/mat-calphad-property-diagram--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagram --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/mat-calphad-property-diagram .gemini/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .gemini/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagramInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/mat-calphad-property-diagram .github/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .github/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install learningmatter-mit/AtomisticSkills mat-calphad-property-diagram --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/learningmatter-mit/AtomisticSkills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/mat-calphad-property-diagram .opencode/skills/mat-calphad-property-diagram && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "mat-calphad-property-diagram" agent skill from https://github.com/learningmatter-mit/AtomisticSkills/tree/main/skills/mat-calphad-property-diagram into .opencode/skills/mat-calphad-property-diagram/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mat-calphad-property-diagram", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
mat-calphad-property-diagramCalculate temperature-dependent thermodynamic properties like Equilibrium Phase Fractions for a specific alloy composition using CALPHAD models.
Mat Calphad Property Diagram is an agent skill from learningmatter-mit/AtomisticSkills. Calculate temperature-dependent thermodynamic properties like Equilibrium Phase Fractions for a specific alloy composition using CALPHAD models.
Its SKILL.md is about 530 tokens, which your agent loads only when the skill is triggered. The skill folder holds 6 other files, including scripts (for example `examples/Al-Zn/README.md` and `scripts/plot_phase_fractions.py`).
The repository describes itself as: Integrating AtomisticSkills into Agentic IDEs (Cursor, Claude Code, Codex, Google Antigravity, Hermes Agent, etc). The licence is MIT.
2 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 6257444. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships 1 file in scripts/ (Python), which the agent can run.
From the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
github.comFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Mat Calphad Property Diagram loads about 533 tokens when it runs. Until then it costs about 43 tokens; SKILL.md has 160 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
The full file from learningmatter-mit/AtomisticSkills at commit 6257444, republished under its MIT licence (© learningmatter-mit). 160 words, ~533 tokens.
.claude/skills/mat-calphad-property-diagram/SKILL.md (or your agent's skills folder). This skill also uses 3 other files; get the full folder from GitHub.To predict the equilibrium phase stability, phase fractions, and other extensive thermodynamic properties for a fixed multi-component alloy at different temperatures using PyCalphad. Very useful for modeling solidification, heat treatment paths, and precipitation sequences.
You must obtain a legitimate .tdb (Thermodynamic Data Base) file for the chemical system.
Calculate what phases are present, and their molar fractions, across a cooling/heating schedule for a fixed composition.
${CLAUDE_SKILL_DIR}/../../venv/run cpu python ${CLAUDE_SKILL_DIR}/scripts/plot_phase_fractions.py path/to/database.tdb --elements Element1 Element2 --composition Element2 0.3 --t-range 300 1000 10 --output research_dir/phase_fractions.png--composition: The solute element and its molar fraction (e.g. Zn 0.3 means 30 mol% Zn).--t-range: START STOP STEP in Kelvin. Ensure solving across liquidus and solidus.Evaluating phase fractions for an Al-40%Zn alloy as it cools:
${CLAUDE_SKILL_DIR}/../../venv/run cpu python ${CLAUDE_SKILL_DIR}/scripts/plot_phase_fractions.py ${CLAUDE_SKILL_DIR}/../mat-calphad-phase-diagram/examples/Al-Zn/alzn_mey.tdb --elements Al Zn --composition Zn 0.4 --t-range 300 900 10 --output phase_fractions.pngcpu environment.Author: Bowen Deng Contact: GitHub @learningmatter-mit
© learningmatter-mit, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 3 other files (scripts) in skills/mat-calphad-property-diagram of learningmatter-mit/AtomisticSkills.
Open the folder on GitHubat commit 6257444
Mat Calphad Property Diagram next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Mat Calphad Property Diagram this skilllearningmatter-mit/AtomisticSkills | 176 | — | ~533 | Automated safety check: Pass | MIT | |
| Dependency Scanningsickn33/agentic-awesome-skills | 47k | 1 repos | ~2.4k | Automated safety check: Pass | MIT | |
| Dependency Checkruvnet/ruflo | 74k | — | ~258 | Automated safety check: Pass | MIT | |
| Dependency Updatecodewhale-hq/Codewhale | 41k | — | ~142 | Automated safety check: Pass | MIT | |
| CSS At Propertythedaviddias/Front-End-Checklist | 74k | — | ~602 | Automated safety check: Pass | MIT | |
| Bump Sentry Dependencygetsentry/sentry | 46k | — | ~815 | Automated safety check: Pass | Custom licence |
sickn33/agentic-awesome-skills
Scan package dependencies for known vulnerabilities using Snyk, Dependabot, and OWASP Dependency-Check.
ruvnet/ruflo
Scan project dependencies for known vulnerabilities and CVEs.
codewhale-hq/Codewhale
Read release notes/changelogs, update a defined dependency scope, handle breaking changes, and verify.
thedaviddias/Front-End-Checklist
A skill your agent uses when implementing animated gradients, complex CSS transitions that involve custom property values, or building a typed design token system where custom property misuse should…
getsentry/sentry
Bumps an existing Python dependency in getsentry/sentry through the repository's self-serve GitHub Actions workflow.
logseq/logseq
Audit, plan, and refresh dependency upgrades for the Logseq repository by scanning every non-gitignored package.json, deps.edn, bb.edn and nbb.edn manifest, checking latest upstream versions…
learningmatter-mit/AtomisticSkills
Define a docking search box (center coordinates + box dimensions in Angstroms) from a co-crystal ligand, binding-site residues, or a saved JSON specification.
learningmatter-mit/AtomisticSkills
Build a solvated, charge-neutralized protein-ligand complex for OpenMM molecular dynamics simulation.
learningmatter-mit/AtomisticSkills
Identify and rank ligandable pockets on a protein structure or model using geometry (fpocket) or an ML predictor (P2Rank).
learningmatter-mit/AtomisticSkills
Calculate homolytic and heterolytic bond dissociation energies (BDEs) for all single bonds in a molecule using MLIPs with RDKit fragmentation.
learningmatter-mit/AtomisticSkills
Generate molecular conformers with RDKit ETKDG, relax with MLIPs, and rank by energy with Boltzmann weighting.
learningmatter-mit/AtomisticSkills
Query multiple MOF databases (QMOF via MPContribs; ARC-MOF DB7/Majumdar et al.
Calculate temperature-dependent thermodynamic properties like Equilibrium Phase Fractions for a specific alloy composition using CALPHAD models. Mat Calphad Property Diagram is an agent skill from learningmatter-mit/AtomisticSkills. Calculate temperature-dependent thermodynamic properties like Equilibrium Phase Fractions for a specific alloy composition using CALPHAD models.
Run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a claude-code`. Or copy the skill folder (skills/mat-calphad-property-diagram in learningmatter-mit/AtomisticSkills) into .claude/skills/mat-calphad-property-diagram in your project. Claude Code loads it when a task matches its description.
Run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a codex`. Or copy the skill folder (skills/mat-calphad-property-diagram in learningmatter-mit/AtomisticSkills) into .agents/skills/mat-calphad-property-diagram in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add learningmatter-mit/AtomisticSkills --skill mat-calphad-property-diagram -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/mat-calphad-property-diagram, .gemini/skills/mat-calphad-property-diagram, .github/skills/mat-calphad-property-diagram and .opencode/skills/mat-calphad-property-diagram in your project.
Going by SKILL.md and its folder, Mat Calphad Property Diagram needs Python for the scripts in its folder. Our summary lists: Python 3.
SKILL.md names 1 domain. As links in the text: github.com. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
Mat Calphad Property Diagram is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 533 tokens (SKILL.md is roughly 2.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Mat Calphad Property Diagram: Dependency Scanning (sickn33/agentic-awesome-skills, 47k stars), Dependency Check (ruvnet/ruflo, 74k stars), Dependency Update (codewhale-hq/Codewhale, 41k stars) and CSS At Property (thedaviddias/Front-End-Checklist, 74k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
learningmatter-mit (a GitHub organization) maintains it in learningmatter-mit/AtomisticSkills, which has 176 GitHub stars. The repository holds 129 skills in this directory. The repository was last updated on October 7, 2026.
Source: learningmatter-mit/AtomisticSkills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.