LLM Wiki Knowledge Graph
Egonex-AI/Understand-Anything
Detects a Karpathy-pattern LLM wiki and builds an interactive knowledge graph with entities, implicit relationships and topic clusters.
Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw…
Install Graphify Query
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install Kc1t/alethe-agents graphify-query --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/graphify-query .claude/skills/graphify-query && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .claude/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-queryType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install Kc1t/alethe-agents graphify-query --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/graphify-query .agents/skills/graphify-query && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .agents/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install Kc1t/alethe-agents graphify-query --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/graphify-query .cursor/skills/graphify-query && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .cursor/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/Kc1t/alethe-agents.git --path .claude/skills/graphify-query--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install Kc1t/alethe-agents graphify-query --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/graphify-query .gemini/skills/graphify-query && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .gemini/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install Kc1t/alethe-agents graphify-queryInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/graphify-query .github/skills/graphify-query && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .github/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add Kc1t/alethe-agents --skill graphify-query -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install Kc1t/alethe-agents graphify-query --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/Kc1t/alethe-agents.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/graphify-query .opencode/skills/graphify-query && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "graphify-query" agent skill from https://github.com/Kc1t/alethe-agents/tree/main/.claude/skills/graphify-query into .opencode/skills/graphify-query/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "graphify-query", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
graphify-query- GitHub stars
- 827
- Token cost
- ~411 tokens
- SKILL.md length
- 170 words
- Files
- 1
- Skills in repo
- 1
- Repo updated
- First seen
- Licence
- AGPL-3.0
At a glance
Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw…
- Codebase-structure questions instead of raw grep/source browsing
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
- Tasks that involve Knowledge graphs
What it does
Graphify Query is an agent skill from Kc1t/alethe-agents. Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw grep/source browsing.
Its SKILL.md is about 410 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Knowledge Management, covering Knowledge graphs. The repository describes itself as: A local-first desktop workspace for running, organizing, and resuming multiple coding agents and shells with real PTYs, split panes, persistent layouts, and local session history. The licence is AGPL-3.0.
When your agent uses it
- Codebase-structure questions instead of raw grep/source browsing
- Tasks that involve Knowledge graphs
Example prompts
- “/graphify-query”
What it can do on your machine
Read from SKILL.md and the folder at commit 505e2b3. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Graphify Query loads about 411 tokens when it runs. Until then it costs about 58 tokens; SKILL.md has 170 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from Kc1t/alethe-agents at commit 505e2b3, republished under its AGPL-3.0 licence (© Kc1t). 170 words, ~411 tokens.
Download SKILL.mdSave it as
.claude/skills/graphify-query/SKILL.md (or your agent's skills folder).- name
- graphify-query
- description
- Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw grep/source browsing.
Graphify
This project has a knowledge graph at graphify-out/ with god nodes, community structure, and
cross-file relationships.
Universal across the 3 agent providers Alethe spawns (Claude Code, Codex, OpenCode) when the
project has Graphify enabled: each gets the Graphify MCP server wired into its session
automatically (Claude via --mcp-config; Codex/OpenCode via .codex/config.toml/opencode.json
in the project root — see graphify_codex_config_write/graphify_opencode_config_write in
src-tauri/src/graphify.rs).
Rules:
- If a Graphify MCP tool (e.g.
graphify_query/similar) is available in this session, prefer calling it directly over shelling out — same scoped-subgraph result, no extra process spawn. - Otherwise, for codebase questions, first run
graphify query "<question>"when graphify-out/graph.json exists. Usegraphify path "<A>" "<B>"for relationships andgraphify explain "<concept>"for focused concepts. These return a scoped subgraph, usually much smaller than GRAPH_REPORT.md or raw grep output. - If graphify-out/wiki/index.md exists, use it for broad navigation instead of raw source browsing.
- Read graphify-out/GRAPH_REPORT.md only for broad architecture review or when query/path/explain do not surface enough context.
- After modifying code, run
graphify update .to keep the graph current (AST-only, no API cost).
© Kc1t, AGPL-3.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in .claude/skills/graphify-query of Kc1t/alethe-agents.
Open the folder on GitHubat commit 505e2b3
Compare with similar skills
Graphify Query next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Graphify Query this skillKc1t/alethe-agents | 827 | — | ~411 | Automated safety check: Pass | AGPL-3.0 | |
| LLM Wiki Knowledge GraphEgonex-AI/Understand-Anything | 85k | 1 repos | ~1.5k | Automated safety check: Pass | MIT | |
| Obsidian Canvas BoardsAgriciDaniel/claude-obsidian | 15k | — | ~1.4k | Automated safety check: Pass | MIT | |
| Ontology1mancompany/OneManCompany | 438 | 2 repos | ~1.5k | Automated safety check: Pass | Apache-2.0 | |
| Graphagenticnotetaking/arscontexta | 3.5k | 1 repos | ~4.9k | Automated safety check: Notes | MIT | |
| Knowledge Graphgnomeria/usbtree | 688 | — | ~1.5k | Automated safety check: Pass | MIT |
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Obsidian Canvas Boards
AgriciDaniel/claude-obsidian
Creates, inspects and updates Obsidian JSON Canvas boards in a vault, with text, file, link, group and edge nodes, using safe recoverable edits.
Ontology
1mancompany/OneManCompany
Typed knowledge graph for structured agent memory and composable skills.
Graph
agenticnotetaking/arscontexta
Interactive knowledge graph analysis. An agent skill from agenticnotetaking/arscontexta.
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gnomeria/usbtree
Set up and maintain a lightweight, file-based knowledge graph of the repo — entities, typed relations, decisions, gotchas — so agents load context fast instead of re-exploring the codebase every…
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Write a project's knowledge pages in Nimbalyst Pages -- record what people said and decided in the page it affects, keep typed pages for the things the team tracks (its own types, such as modules…
Related
Categories
Questions about Graphify Query
What does Graphify Query do?
Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw…. Graphify Query is an agent skill from Kc1t/alethe-agents. Query the Graphify knowledge graph (graphify-out/) for this repo's architecture, god nodes, community structure, and cross-file relationships — use for codebase-structure questions instead of raw grep/source browsing.
When should I use Graphify Query?
Graphify Query fits situations like: codebase-structure questions instead of raw grep/source browsing; tasks that involve Knowledge graphs.
How do I install Graphify Query in Claude Code?
Run `npx skills add Kc1t/alethe-agents --skill graphify-query -a claude-code`. Or copy the skill folder (.claude/skills/graphify-query in Kc1t/alethe-agents) into .claude/skills/graphify-query in your project. Claude Code loads it when a task matches its description.
How do I install Graphify Query in Codex?
Run `npx skills add Kc1t/alethe-agents --skill graphify-query -a codex`. Or copy the skill folder (.claude/skills/graphify-query in Kc1t/alethe-agents) into .agents/skills/graphify-query in your project. Codex loads it when a task matches its description.
Can I use Graphify Query in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add Kc1t/alethe-agents --skill graphify-query -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/graphify-query, .gemini/skills/graphify-query, .github/skills/graphify-query and .opencode/skills/graphify-query in your project.
What does Graphify Query need to run?
SKILL.md names no scripts, command-line tools or credentials: Graphify Query is instructions for the agent only.
Does Graphify Query access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Graphify Query safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Graphify Query use?
Graphify Query is published under the AGPL-3.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Graphify Query use?
About 411 tokens (SKILL.md is roughly 1.6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Graphify Query?
Skills that share tags, products or a category with Graphify Query: LLM Wiki Knowledge Graph (Egonex-AI/Understand-Anything, 85k stars), Obsidian Canvas Boards (AgriciDaniel/claude-obsidian, 15k stars), Ontology (1mancompany/OneManCompany, 438 stars) and Graph (agenticnotetaking/arscontexta, 3.5k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Graphify Query?
Kc1t (a GitHub user) maintains it in Kc1t/alethe-agents, which has 827 GitHub stars. The repository was last updated on October 6, 2026.
Source: Kc1t/alethe-agents on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.