Agent skill

Deep Research

by juanandresgs in juanandresgs/claude-ctrl

Multi-model deep research with comparative assessment (OpenAI + Perplexity + Gemini).

No licenceAuto-check: notesResearch & Science

Install Deep Research

skills CLI
$ npx skills add juanandresgs/claude-ctrl --skill deep-research -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install juanandresgs/claude-ctrl deep-research --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/juanandresgs/claude-ctrl.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/deep-research .claude/skills/deep-research && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
deep-research
GitHub stars
193
Token cost
~3.1k tokens
SKILL.md length
781 words
Files
23 (incl. scripts)
Skills in repo
10
Repo updated
First seen
Licence
None found

At a glance

Multi-model deep research with comparative assessment (OpenAI + Perplexity + Gemini).

  • Works in 3 steps: Immediately tell the user with a… → You SHOULD supplement failed providers… → Note which findings in your synthesis…
  • Tasks that involve Deep research
  • SKILL.md covers Setup Check, Research Execution, Synthesis: Produce the… and Save All Outputs, plus 3 more sections
  • Runs Python scripts from its folder; calls python3; needs OPENAI_API_KEY and PERPLEXITY_API_KEY

What it does

Deep Research is an agent skill from juanandresgs/claude-ctrl. Multi-model deep research with comparative assessment (OpenAI + Perplexity + Gemini). Queries 3 deep research providers in parallel and produces a comparative synthesis.

Its SKILL.md is about 3.1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 26 other files, including scripts (for example `fixtures/gemini_sample.json`, `fixtures/openai_sample.json` and `fixtures/perplexity_sample.json`).

It sits in Research & Science, covering Deep research and Web search. It works with OpenAI and Perplexity. The repository describes itself as: DEPRECATED / UNMAINTAINED — historical reference only. Do not install or rely on this project.

When your agent uses it

  • Tasks that involve Deep research
  • Tasks that involve Web search

Example prompts

  • “/deep-research”

Requirements

  • Python 3
  • A credential in OPENAI_API_KEY
  • A credential in PERPLEXITY_API_KEY
  • Pre-approved tools (allowed-tools): Bash, Read, Write, AskUserQuestion, WebSearch

Workflow steps

3 steps, taken from the first numbered list in SKILL.md.

  1. Immediately tell the user with a WARNING: prefix — which providers failed, their error messages, and elapsed time
  2. You SHOULD supplement failed providers with WebSearch to fill knowledge gaps
  3. Note which findings in your synthesis came from WebSearch rather than deep research

What it can do on your machine

Read from SKILL.md and the folder at commit dfbdd82. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves these tools, so the agent can use them without asking each time:

    • Bash
    • Read
    • Write
    • AskUserQuestion
    • WebSearch

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    Ships 11 files in scripts/ (Python, from the files we listed), which the agent can run.

    Shell commands in SKILL.md call:

    • python3

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names these keys or tokens, usually read from environment variables:

    • OPENAI_API_KEY
    • PERPLEXITY_API_KEY
    • GEMINI_API_KEY

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Deep Research loads about 3.1k tokens when it runs. Until then it costs about 46 tokens; SKILL.md has 781 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~46
When it runs · the whole SKILL.md, loaded when a task matches
~3.1k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check: notes

The automated check noted patterns worth knowing about, such as sudo or a known installer.

  • NoteMentions a .env fileSKILL.md:16
    s at least one API key. Check `~/.claude/.env`:
  • NoteMentions a .env fileSKILL.md:23
    cat > ~/.claude/.env << 'ENVEOF'
  • NoteMentions a .env fileSKILL.md:37
    chmod 600 ~/.claude/.env
  • NoteMentions a .env fileSKILL.md:38
    echo "Config created at ~/.claude/.env"
  • NotePre-approves every shell command (allowed-tools: Bash)SKILL.md
    allowed-tools: Bash, Read, Write, AskUserQuestion, WebSearch

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 781 words (~3,083 tokens).

“Query up to 3 deep research models (OpenAI o3-deep-research, Perplexity sonar-deep-research, Gemini deep-research-pro) in parallel, then produce a comparative assessment highlighting agreements, disagreements, and unique insights.”

— opening of SKILL.md by juanandresgs
name
deep-research
allowed-tools
Bash, Read, Write, AskUserQuestion, WebSearch
argument-hint
[research topic or question]
context
fork
agent
general-purpose

Read the full SKILL.md on GitHub

Files

SKILL.md and 22 other files (scripts) in skills/deep-research of juanandresgs/claude-ctrl.

  • SKILL.md
  • .gitignore
  • fixtures/gemini_sample.json
  • fixtures/openai_sample.json
  • fixtures/perplexity_sample.json
  • scripts/deep_research.py
  • scripts/lib/__init__.py
  • scripts/lib/env.py
  • scripts/lib/errors.py
  • scripts/lib/gemini_dr.py
  • scripts/lib/http.py
  • scripts/lib/matrix.py
  • scripts/lib/openai_dr.py
  • scripts/lib/perplexity_dr.py
  • scripts/lib/render.py
  • scripts/lib/validate.py
  • tests/__init__.py
  • … and 6 more

Open the folder on GitHubat commit dfbdd82

Compare with similar skills

Deep Research next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Deep Research compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Deep Research this skilljuanandresgs/claude-ctrl193—~3.1kAutomated safety check: NotesNone
Bmad Deep Recondelorenj/mcp-server-trello445—~2.3kAutomated safety check: PassMIT
Librariumjkudish/librarium134—~1.9kAutomated safety check: PassMIT
Brain-Augmented Web Researchgarrytan/gbrain31k—~2kAutomated safety check: NotesMIT
Weekly Signal DiffNateBJones-Projects/OB14.7k—~1.7kAutomated safety check: PassCustom licence
Deep Researchglebis/claude-skills391—~2.6kAutomated safety check: NotesMIT

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    delorenj/mcp-server-trello

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    jkudish/librarium

    Runs evidence-aware, multi-provider research with the Librarium v2 CLI.

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    4.7k GitHub stars~1.7k tokensUpdated 2 days ago
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  • Deep Research

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    391 GitHub stars~2.6k tokensUpdated 3 days ago
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  • Research Lookup

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    2.4k GitHub starsUsed in 2 repos~3.6k tokens
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Questions about Deep Research

What does Deep Research do?

Multi-model deep research with comparative assessment (OpenAI + Perplexity + Gemini). Deep Research is an agent skill from juanandresgs/claude-ctrl. Multi-model deep research with comparative assessment (OpenAI + Perplexity + Gemini).

When should I use Deep Research?

Deep Research fits situations like: tasks that involve Deep research; tasks that involve Web search.

How do I install Deep Research in Claude Code?

Run `npx skills add juanandresgs/claude-ctrl --skill deep-research -a claude-code`. Or copy the skill folder (skills/deep-research in juanandresgs/claude-ctrl) into .claude/skills/deep-research in your project. Claude Code loads it when a task matches its description.

How do I install Deep Research in Codex?

Run `npx skills add juanandresgs/claude-ctrl --skill deep-research -a codex`. Or copy the skill folder (skills/deep-research in juanandresgs/claude-ctrl) into .agents/skills/deep-research in your project. Codex loads it when a task matches its description.

Can I use Deep Research in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add juanandresgs/claude-ctrl --skill deep-research -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/deep-research, .gemini/skills/deep-research, .github/skills/deep-research and .opencode/skills/deep-research in your project.

What does Deep Research need to run?

Going by SKILL.md and its folder, Deep Research needs Python for the scripts in its folder, the command-line tools its instructions call (python3) and credentials named OPENAI_API_KEY, PERPLEXITY_API_KEY and GEMINI_API_KEY. Our summary lists: Python 3; A credential in OPENAI_API_KEY; A credential in PERPLEXITY_API_KEY. Its frontmatter pre-approves these tools: Bash, Read, Write, AskUserQuestion, WebSearch.

Does Deep Research access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Deep Research safe to install?

Our automated static check of SKILL.md found notes only (mentions a .env file; pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.

What licence does Deep Research use?

No licence was found for Deep Research or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Deep Research use?

About 3.1k tokens (SKILL.md is roughly 12k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Deep Research?

Skills that share tags, products or a category with Deep Research: Bmad Deep Recon (delorenj/mcp-server-trello, 445 stars), Librarium (jkudish/librarium, 134 stars), Brain-Augmented Web Research (garrytan/gbrain, 31k stars) and Weekly Signal Diff (NateBJones-Projects/OB1, 4.7k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Deep Research?

juanandresgs (a GitHub user) maintains it in juanandresgs/claude-ctrl, which has 193 GitHub stars. The repository holds 10 skills in this directory. The repository was last updated on August 7, 2026.

Source: juanandresgs/claude-ctrl on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.