Annotate Paper
54yyyu/zotero-mcp
Read the open paper and write study annotations into its PDF with zotero-cli - a context box on the title, a four-part summary on the abstract, role-coded abstract highlights, one box per figure…
Run LLM-powered social simulations at scale: silicon sampling, generative ABM, survey/vignette/conjoint experiments, opinion dynamics.
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install joshzyj/open-scholar-skill scholar-simulate --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.claude/skills/scholar-simulate .claude/skills/scholar-simulate && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .claude/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulateType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install joshzyj/open-scholar-skill scholar-simulate --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.claude/skills/scholar-simulate .agents/skills/scholar-simulate && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .agents/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install joshzyj/open-scholar-skill scholar-simulate --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.claude/skills/scholar-simulate .cursor/skills/scholar-simulate && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .cursor/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/joshzyj/open-scholar-skill.git --path .claude/skills/scholar-simulate--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install joshzyj/open-scholar-skill scholar-simulate --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.claude/skills/scholar-simulate .gemini/skills/scholar-simulate && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .gemini/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install joshzyj/open-scholar-skill scholar-simulateInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .github/skills && cp -r skills-src/.claude/skills/scholar-simulate .github/skills/scholar-simulate && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .github/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install joshzyj/open-scholar-skill scholar-simulate --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/joshzyj/open-scholar-skill.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.claude/skills/scholar-simulate .opencode/skills/scholar-simulate && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "scholar-simulate" agent skill from https://github.com/joshzyj/open-scholar-skill/tree/main/.claude/skills/scholar-simulate into .opencode/skills/scholar-simulate/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scholar-simulate", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
scholar-simulateRun LLM-powered social simulations at scale: silicon sampling, generative ABM, survey/vignette/conjoint experiments, opinion dynamics.
Scholar Simulate is an agent skill from joshzyj/open-scholar-skill. Run LLM-powered social simulations at scale: silicon sampling, generative ABM, survey/vignette/conjoint experiments, opinion dynamics. Multi-provider (Anthropic/OpenAI/open-source/local). Validation against human data is mandatory before any publishable claim.
Its SKILL.md is about 5.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 24 other files, including reference files and assets (for example `assets/interactive_runner.py`, `assets/personas.py` and `assets/providers.py`).
It works with OpenAI. The repository describes itself as: Open scholar skill, a claude code plugin, for academic research.
Read from SKILL.md and the folder at commit 6e5ac8e. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Ships script files (Python and Shell, from the files we listed), which the agent can run.
Shell commands in SKILL.md call:
bashpython3From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names these keys or tokens, usually read from environment variables:
OPENAI_API_KEYANTHROPIC_API_KEYFrom names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Scholar Simulate loads about 5.2k tokens when it runs, and up to ~35k if it reads all its reference files. Until then it costs about 69 tokens; SKILL.md has 2,027 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Its licence (Custom licence) doesn't allow us to republish the file, so here is its outline and opening line. It has 2,027 words (~5,182 tokens).
“You are an expert computational social scientist running LLM-powered simulations: using language models as silicon respondents and as generative agents to approximate human attitudinal, behavioral, and interactional distributions. This skill ships a real execution engine (assets/) that scales from dozens…”
SKILL.md and 21 other files (references, assets) in .claude/skills/scholar-simulate of joshzyj/open-scholar-skill.
Open the folder on GitHubat commit 6e5ac8e
Scholar Simulate next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Scholar Simulate this skilljoshzyj/open-scholar-skill | 168 | — | ~5.2k | Automated safety check: Pass | Custom licence | |
| Annotate Paper54yyyu/zotero-mcp | 5.3k | — | ~1.5k | Automated safety check: Pass | MIT | |
| Survey Generatorrohitg00/pro-workflow | 2.9k | 1 repos | ~1.6k | Automated safety check: Pass | None | |
| Autonomous Researchfedericodeponte/opendraft | 507 | — | ~8.2k | Automated safety check: Pass | Apache-2.0 | |
| Research ReviewGRIND-Lab-Core/night_owl_research_agent | 106 | 6 repos | ~1.1k | Automated safety check: Notes | None | |
| Research RefinezjYao36/Auto-Research-Refine | 128 | 7 repos | ~6.9k | Automated safety check: Notes | None |
54yyyu/zotero-mcp
Read the open paper and write study annotations into its PDF with zotero-cli - a context box on the title, a four-part summary on the abstract, role-coded abstract highlights, one box per figure…
rohitg00/pro-workflow
Compile a structured literature survey on any AI/ML topic. An agent skill from rohitg00/pro-workflow.
federicodeponte/opendraft
An 18-agent pipeline that turns one topic line into a drafted research paper, literature review, or thesis chapter.
GRIND-Lab-Core/night_owl_research_agent
Get a deep critical review of research idea from GPT via Codex MCP.
zjYao36/Auto-Research-Refine
Turns a vague research direction into a focused, problem-anchored method plan through up to five review rounds with a second model.
heyu-233/engineering-figure-agent
A skill your agent uses when the user needs engineering or research-paper figures: system architecture diagrams, algorithm workflows, hardware schematics, benchmark charts, ablation plots, figure…
joshzyj/open-scholar-skill
Turn unstructured text into validated, structured variables at corpus scale with LLMs: codebook design, dev/gold-set construction, DSPy prompt optimization, a hard reliability gate (Cohen κ ≥ 0.70)…
joshzyj/open-scholar-skill
Stable, deterministic social-science research-paper pipeline from idea or data to verified manuscript, citations, replication package, and final md/docx/tex/pdf outputs.
joshzyj/open-scholar-skill
Build and query a local vector database + GraphRAG over your entire reference library (Zotero or a PDF folder) for literature review.
joshzyj/open-scholar-skill
Comprehensive causal inference toolkit for social science research.
joshzyj/open-scholar-skill
Comprehensive open data directory (100+ datasets across 14 categories) with auto-fetch capability, plus data collection instrument design, variable dictionaries, data management, IRB materials, and…
joshzyj/open-scholar-skill
Conduct exploratory data analysis (EDA) before hypothesis testing.
Works with
Run LLM-powered social simulations at scale: silicon sampling, generative ABM, survey/vignette/conjoint experiments, opinion dynamics. Scholar Simulate is an agent skill from joshzyj/open-scholar-skill. Run LLM-powered social simulations at scale: silicon sampling, generative ABM, survey/vignette/conjoint experiments, opinion dynamics.
Run `npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a claude-code`. Or copy the skill folder (.claude/skills/scholar-simulate in joshzyj/open-scholar-skill) into .claude/skills/scholar-simulate in your project. Claude Code loads it when a task matches its description.
Run `npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a codex`. Or copy the skill folder (.claude/skills/scholar-simulate in joshzyj/open-scholar-skill) into .agents/skills/scholar-simulate in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add joshzyj/open-scholar-skill --skill scholar-simulate -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/scholar-simulate, .gemini/skills/scholar-simulate, .github/skills/scholar-simulate and .opencode/skills/scholar-simulate in your project.
Going by SKILL.md and its folder, Scholar Simulate needs Python and a shell for the scripts in its folder, the command-line tools its instructions call (bash and python3) and credentials named OPENAI_API_KEY and ANTHROPIC_API_KEY. Our summary lists: Python 3; A Bash shell.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Scholar Simulate has a licence file (the repository's licence) that doesn't match a standard licence. Read it on GitHub before reusing the skill.
About 5.2k tokens (SKILL.md is roughly 21k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 30k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Scholar Simulate: Annotate Paper (54yyyu/zotero-mcp, 5.3k stars), Survey Generator (rohitg00/pro-workflow, 2.9k stars), Autonomous Research (federicodeponte/opendraft, 507 stars) and Research Review (GRIND-Lab-Core/night_owl_research_agent, 106 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
joshzyj (a GitHub user) maintains it in joshzyj/open-scholar-skill, which has 168 GitHub stars. The repository holds 30 skills in this directory. The repository was last updated on September 18, 2026.
Source: joshzyj/open-scholar-skill on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.