Astropy
zLanqing/codex-claude-academic-skills
Comprehensive Python library for astronomy and astrophysics.
Prepare and explain xTB semiempirical quantum-chemistry workflows for single-point energy, forces, charges, dipole, geometry optimization, and molecular dynamics.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtb --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/quantum-chemistry/xtb .claude/skills/xtb && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .claude/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtbType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtb --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/quantum-chemistry/xtb .agents/skills/xtb && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .agents/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtb --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/quantum-chemistry/xtb .cursor/skills/xtb && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .cursor/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git --path quantum-chemistry/xtb--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtb --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/quantum-chemistry/xtb .gemini/skills/xtb && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .gemini/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtbInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/quantum-chemistry/xtb .github/skills/xtb && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .github/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills xtb --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/quantum-chemistry/xtb .opencode/skills/xtb && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "xtb" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/quantum-chemistry/xtb into .opencode/skills/xtb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "xtb", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
xtbPrepare and explain xTB semiempirical quantum-chemistry workflows for single-point energy, forces, charges, dipole, geometry optimization, and molecular dynamics.
Xtb is an agent skill from jinzhezenggroup/computational-chemistry-agent-skills. Prepare and explain xTB semiempirical quantum-chemistry workflows for single-point energy, forces, charges, dipole, geometry optimization, and molecular dynamics. Use when the user asks for xTB calculations directly, or wants to use xTB through Python/ASE/dpdata bridges while keeping xTB as the primary method rather than as an ASE-only backend.
Its SKILL.md is about 1.2k tokens, which your agent loads only when the skill is triggered. The skill folder holds 2 other files, including reference files (for example `references/commands-and-workflow.md`). Compatibility notes: Requires a runnable xTB environment. Python-based workflows can use the xtb package; for reproducible ad hoc runs with uv, prefer uv run --no-project --with…
It sits in Research & Science, covering Physical and earth sciences. It works with Python. The repository describes itself as: Agent skills to run computational-chemistry tasks, used in OpenClaw. The licence is LGPL-3.0-or-later.
3 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 5c19e75. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
uvFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Requires a runnable xTB environment. Python-based workflows can use the `xtb` package; for reproducible ad hoc runs with uv, prefer `uv run --no-project --with ase --with xtb --with typing_extensions python ...` when using the ASE bridge.
From compatibility in the SKILL.md frontmatter.
Xtb loads about 1.2k tokens when it runs, and up to ~1.9k if it reads all its reference files. Until then it costs about 88 tokens; SKILL.md has 411 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from jinzhezenggroup/computational-chemistry-agent-skills at commit 5c19e75, republished under its LGPL-3.0-or-later licence (© jinzhezenggroup). 411 words, ~1,200 tokens.
.claude/skills/xtb/SKILL.md (or your agent's skills folder). This skill also uses 1 other file; get the full folder from GitHub.Use this skill as the top-level xTB orchestration layer.
This skill should:
This skill should not:
dpdisp-submit if execution/submission is requestedUse this skill when the user asks for:
GFN0-xTB, GFN1-xTB, or GFN2-xTBIf the user wants Python scripting, ASE integration, or ASE workflows, use:
from xtb.ase.calculator import XTBTreat ASE as an integration layer, not the primary identity of the method.
If the user wants labeled data or geometry minimization through dpdata, bridge via the ASE driver/minimizer while still presenting xTB as the force/energy method.
For one-off Python scripts, prefer uv run instead of uvx because this is a Python package used inside a Python script, not a standalone CLI tool.
Recommended pattern for the ASE bridge:
uv run --no-project --with ase --with xtb --with typing_extensions python your_script.pyNotes:
xtb.xtb-python.ModuleNotFoundError: typing_extensions appears, add --with typing_extensions explicitly.GFN2-xTB: default choice for most molecular single-point and force evaluationsGFN1-xTB: use when there is a user or literature reasonGFN0-xTB: use when the workflow specifically needs xTB-level stress through the ASE bridgeFor copy-paste-ready command and script patterns, see:
references/commands-and-workflow.mdUse that reference when the user specifically wants a minimal runnable example for:
from ase.build import molecule
from xtb.ase.calculator import XTB
atoms = molecule("H2O")
atoms.calc = XTB(method="GFN2-xTB")
print(atoms.get_potential_energy())
print(atoms.get_forces())
print(atoms.get_charges())Common calculator arguments:
methodaccuracyelectronic_temperaturemax_iterationssolventcache_apiProperty support through the ASE bridge includes:
energy / free_energyforcesdipolechargesstress for GFN0-xTB onlyIf the user wants dpdata labeling:
from dpdata.system import System
from xtb.ase.calculator import XTB
sys = System("input.xyz", fmt="xyz")
ls = sys.predict(driver="ase", calculator=XTB(method="GFN2-xTB"))This connects naturally to tools/dpdata-driver.
If the user wants dpdata geometry minimization:
from dpdata.driver import Driver
from dpdata.system import System
from xtb.ase.calculator import XTB
sys = System("input.xyz", fmt="xyz")
ase_driver = Driver.get_driver("ase")(calculator=XTB(method="GFN2-xTB"))
ls = sys.minimize(minimizer="ase", driver=ase_driver, fmax=0.05, max_steps=200)This connects naturally to tools/dpdata-minimizer.
Provide:
dpdisp-submit if execution/submission is requested© jinzhezenggroup, LGPL-3.0-or-later. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 1 other file (references) in quantum-chemistry/xtb of jinzhezenggroup/computational-chemistry-agent-skills.
Open the folder on GitHubat commit 5c19e75
Xtb next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Xtb this skilljinzhezenggroup/computational-chemistry-agent-skills | 148 | — | ~1.2k | Automated safety check: Pass | LGPL-3.0-or-later | |
| AstropyzLanqing/codex-claude-academic-skills | 4.7k | 13 repos | ~2.9k | Automated safety check: Pass | BSD-3-Clause | |
| Cantera Ignition DelayK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~2.2k | Automated safety check: Pass | MIT | |
| Climate DsHongjian01/ClimWorkflow | 102 | — | ~1.2k | Automated safety check: Pass | Custom licence | |
| Chemgraphargonne-lcf/ChemGraph | 162 | — | ~743 | Automated safety check: Pass | Apache-2.0 | |
| FluidSim CFD Simulationsdavila7/claude-code-templates | 33k | 9 repos | ~2.3k | Automated safety check: Pass | MIT |
zLanqing/codex-claude-academic-skills
Comprehensive Python library for astronomy and astrophysics.
K-Dense-AI/scientific-agent-skills
Runs Cantera constant-volume or constant-pressure ignition simulations and reports temperature-based ignition delay with mechanism provenance and checks.
Hongjian01/ClimWorkflow
ClimWorkflow climate-data workflow: map a natural-language climate goal to Plan-Agent / Data-Agent / Coding-Agent roles, then call the 7-tool DAG (optional read-only validate after report).
argonne-lcf/ChemGraph
Use ChemGraph Python and CLI workflows, agent-written batch scripts, and attached chemistry MCP tools.
davila7/claude-code-templates
Runs computational fluid dynamics simulations with the FluidSim Python framework: 2D and 3D Navier-Stokes, shallow water and stratified flow solvers plus output analysis.
K-Dense-AI/scientific-agent-skills
Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API.
jinzhezenggroup/computational-chemistry-agent-skills
Turns a user-supplied atomic structure and DFT settings into a runnable Quantum ESPRESSO input file, stopping short of submitting the job.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares, validates and runs DP-GEN simplify jobs that thin out repeated or redundant DeepMD datasets, generating param.json and machine.json for local or scheduler runs.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares and runs molecular dynamics simulations in LAMMPS with a DeePMD machine-learning potential, writing the input script and choosing NVE, NVT or NPT.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares and explains LAMMPS input scripts for reactive molecular dynamics with the ReaxFF potential, including charge equilibration and ensemble choice.
jinzhezenggroup/computational-chemistry-agent-skills
Generates 3D molecular conformers from SMILES strings or files with RDKit, keeps the lowest-energy one per molecule, and falls back to 2D coordinates when embedding fails.
jinzhezenggroup/computational-chemistry-agent-skills
Computes RDKit physicochemical descriptors and molecular fingerprints from SMILES through a uv-run CLI script that skips and logs invalid molecules.
Works with
Categories
Prepare and explain xTB semiempirical quantum-chemistry workflows for single-point energy, forces, charges, dipole, geometry optimization, and molecular dynamics. Xtb is an agent skill from jinzhezenggroup/computational-chemistry-agent-skills. Prepare and explain xTB semiempirical quantum-chemistry workflows for single-point energy, forces, charges, dipole, geometry optimization, and molecular dynamics.
Xtb fits situations like: the user asks for xTB calculations directly; wants to use xTB through Python/ASE/dpdata bridges while keeping xTB as the primary method rather than as an ASE-only backend.
Run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a claude-code`. Or copy the skill folder (quantum-chemistry/xtb in jinzhezenggroup/computational-chemistry-agent-skills) into .claude/skills/xtb in your project. Claude Code loads it when a task matches its description.
Run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a codex`. Or copy the skill folder (quantum-chemistry/xtb in jinzhezenggroup/computational-chemistry-agent-skills) into .agents/skills/xtb in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill xtb -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/xtb, .gemini/skills/xtb, .github/skills/xtb and .opencode/skills/xtb in your project.
Going by SKILL.md and its folder, Xtb needs the command-line tools its instructions call (uv). Our summary lists: Python 3. Compatibility (from SKILL.md): Requires a runnable xTB environment. Python-based workflows can use the `xtb` package; for reproducible ad hoc runs with uv, prefer `uv run --no-project --with ase --with xtb --with typing_extensions python ...` when using the ASE bridge..
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Xtb is published under the LGPL-3.0-or-later licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.2k tokens (SKILL.md is roughly 4.8k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 744 tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Xtb: Astropy (zLanqing/codex-claude-academic-skills, 4.7k stars), Cantera Ignition Delay (K-Dense-AI/scientific-agent-skills, 48k stars), Climate Ds (Hongjian01/ClimWorkflow, 102 stars) and Chemgraph (argonne-lcf/ChemGraph, 162 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
jinzhezenggroup (a GitHub organization) maintains it in jinzhezenggroup/computational-chemistry-agent-skills, which has 148 GitHub stars. The repository holds 62 skills in this directory. The repository was last updated on October 9, 2026.
Source: jinzhezenggroup/computational-chemistry-agent-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.