MCP Server Builder
anthropics/skills
Guides the design and implementation of Model Context Protocol servers in TypeScript or Python, from tool naming and error messages to evaluation.
Use dpdata Python Driver plugins to label systems (energies/forces/virials) via System.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid).
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driver --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/tools/dpdata-driver .claude/skills/dpdata-driver && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .claude/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driverType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driver --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/tools/dpdata-driver .agents/skills/dpdata-driver && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .agents/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driver --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/tools/dpdata-driver .cursor/skills/dpdata-driver && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .cursor/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git --path tools/dpdata-driver--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driver --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/tools/dpdata-driver .gemini/skills/dpdata-driver && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .gemini/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driverInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/tools/dpdata-driver .github/skills/dpdata-driver && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .github/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install jinzhezenggroup/computational-chemistry-agent-skills dpdata-driver --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/jinzhezenggroup/computational-chemistry-agent-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/tools/dpdata-driver .opencode/skills/dpdata-driver && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "dpdata-driver" agent skill from https://github.com/jinzhezenggroup/computational-chemistry-agent-skills/tree/master/tools/dpdata-driver into .opencode/skills/dpdata-driver/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "dpdata-driver", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
dpdata-driverUse dpdata Python Driver plugins to label systems (energies/forces/virials) via System.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid).
Dpdata Driver is an agent skill from jinzhezenggroup/computational-chemistry-agent-skills. Use dpdata Python Driver plugins to label systems (energies/forces/virials) via System.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid). Use when working with dpdata Python API (not CLI) and you need driver-based energy/force prediction, plugin registration keys, or examples of using dpdata with ASE calculators or DeePMD models.
Its SKILL.md is about 1k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts. Compatibility notes: Requires dpdata or uv for running dpdata
It works with Python. The repository describes itself as: Agent skills to run computational-chemistry tasks, used in OpenClaw. The licence is LGPL-3.0-or-later.
Read from SKILL.md and the folder at commit 5c19e75. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
uvFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Requires dpdata or uv for running dpdata
From compatibility in the SKILL.md frontmatter.
Dpdata Driver loads about 1k tokens when it runs. Until then it costs about 97 tokens; SKILL.md has 253 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from jinzhezenggroup/computational-chemistry-agent-skills at commit 5c19e75, republished under its LGPL-3.0-or-later licence (© jinzhezenggroup). 253 words, ~1,037 tokens.
.claude/skills/dpdata-driver/SKILL.md (or your agent's skills folder).Use dpdata “driver plugins” to label a dpdata.System (predict energies/forces/virials) and obtain a dpdata.LabeledSystem.
System into a LabeledSystem by computing:energies (required)forces (optional but common)virials (optional)In dpdata, this is exposed as:
System.predict(*args, driver="dp", **kwargs) -> LabeledSystemdriver can be:
"ase", "dp", "gaussian"Driver.get_driver("ase")(...)When unsure what drivers exist in this dpdata version/env, query them at runtime:
import dpdata
from dpdata.driver import Driver
print(sorted(Driver.get_drivers().keys()))import dpdata ensures built-in plugins are loaded before listing registered drivers.
In the current repo state, keys include:
asedp / deepmd / deepmd-kitgaussiansqmhybrid(Exact set depends on dpdata version and installed extras.)
import dpdata
from dpdata.system import System
sys = System("input.xyz", fmt="xyz")
ls = sys.predict(driver="ase", calculator=...) # returns dpdata.LabeledSystemassert "energies" in ls.data
# optional:
# assert "forces" in ls.data
# assert "virials" in ls.dataThis is the easiest fully runnable example because it doesn’t require external QM software.
Dependencies (recommended): declare script dependencies with uv inline metadata, then run with uv run.
# /// script
# requires-python = ">=3.8"
# dependencies = [
# "dpdata",
# "numpy",
# "ase",
# ]
# ///Script:
from pathlib import Path
import numpy as np
from ase.calculators.lj import LennardJones
from dpdata.system import System
# write a tiny molecule
Path("tmp.xyz").write_text("""2\n\nH 0 0 0\nH 0 0 0.74\n""")
sys = System("tmp.xyz", fmt="xyz")
ls = sys.predict(driver="ase", calculator=LennardJones())
print("energies", np.array(ls.data["energies"]))
print("forces shape", np.array(ls.data["forces"]).shape)
if "virials" in ls.data:
print("virials shape", np.array(ls.data["virials"]).shape)
else:
print("virials: <not provided by this driver/calculator>")from ase.calculators.lj import LennardJones
from dpdata.driver import Driver
from dpdata.system import System
sys = System("tmp.xyz", fmt="xyz")
ase_driver = Driver.get_driver("ase")(calculator=LennardJones())
ls = sys.predict(driver=ase_driver)Use driver="hybrid" to sum energies/forces/virials from multiple drivers.
The HybridDriver accepts drivers=[ ... ] where each item is either:
Driver instance{"type": "sqm", ...} (type is the driver key)Example (structure only; may require external executables):
from dpdata.driver import Driver
hyb = Driver.get_driver("hybrid")(
drivers=[
{"type": "sqm", "qm_theory": "DFTB3"},
{"type": "dp", "dp": "frozen_model.pb"},
]
)
# ls = sys.predict(driver=hyb)dp requires deepmd-kit + a model filegaussian requires Gaussian and a valid executable (default g16)sqm requires AmberTools sqm© jinzhezenggroup, LGPL-3.0-or-later. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in tools/dpdata-driver of jinzhezenggroup/computational-chemistry-agent-skills.
Open the folder on GitHubat commit 5c19e75
Dpdata Driver next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Dpdata Driver this skilljinzhezenggroup/computational-chemistry-agent-skills | 148 | — | ~1k | Automated safety check: Pass | LGPL-3.0-or-later | |
| MCP Server Builderanthropics/skills | 180k | 63 repos | ~2.3k | Automated safety check: Pass | Apache-2.0 | |
| PDF Processinganthropics/skills | 180k | 47 repos | ~2k | Automated safety check: Pass | Proprietary | |
| NotebookLM Research AssistantPleasePrompto/notebooklm-skill | 7.8k | 14 repos | ~2.4k | Automated safety check: Notes | MIT | |
| Manim Video Productionbrowser-use/video-use | 29k | 6 repos | ~3k | Automated safety check: Pass | MIT | |
| PPT Masterhugohe3/ppt-master | 59k | 1 repos | ~2.5k | Automated safety check: Pass | MIT |
anthropics/skills
Guides the design and implementation of Model Context Protocol servers in TypeScript or Python, from tool naming and error messages to evaluation.
anthropics/skills
Handles everyday PDF jobs in Python and on the command line: extract text and tables, merge, split, rotate, watermark, fill forms, encrypt and OCR.
PleasePrompto/notebooklm-skill
Lets Claude Code ask questions of your Google NotebookLM notebooks through browser automation and return answers grounded in your uploaded sources.
browser-use/video-use
Produces math and technical explainer videos with Manim Community Edition: concept animations, equation derivations, algorithm walkthroughs and data stories.
hugohe3/ppt-master
Generates editable PowerPoint decks, rebuilds slides from images, fills .pptx templates and polishes existing presentations through routed workflows.
zLanqing/codex-claude-academic-skills
Machine learning in Python with scikit-learn. An agent skill from zLanqing/codex-claude-academic-skills.
jinzhezenggroup/computational-chemistry-agent-skills
Turns a user-supplied atomic structure and DFT settings into a runnable Quantum ESPRESSO input file, stopping short of submitting the job.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares, validates and runs DP-GEN simplify jobs that thin out repeated or redundant DeepMD datasets, generating param.json and machine.json for local or scheduler runs.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares and runs molecular dynamics simulations in LAMMPS with a DeePMD machine-learning potential, writing the input script and choosing NVE, NVT or NPT.
jinzhezenggroup/computational-chemistry-agent-skills
Prepares and explains LAMMPS input scripts for reactive molecular dynamics with the ReaxFF potential, including charge equilibration and ensemble choice.
jinzhezenggroup/computational-chemistry-agent-skills
Generates 3D molecular conformers from SMILES strings or files with RDKit, keeps the lowest-energy one per molecule, and falls back to 2D coordinates when embedding fails.
jinzhezenggroup/computational-chemistry-agent-skills
Computes RDKit physicochemical descriptors and molecular fingerprints from SMILES through a uv-run CLI script that skips and logs invalid molecules.
Works with
Use dpdata Python Driver plugins to label systems (energies/forces/virials) via System.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid). Dpdata Driver is an agent skill from jinzhezenggroup/computational-chemistry-agent-skills.predict(), list available drivers, and build Driver objects (ase/deepmd/gaussian/sqm/hybrid).
Dpdata Driver fits situations like: working with dpdata Python API (not CLI) and you need driver-based energy/force prediction; plugin registration keys; examples of using dpdata with ASE calculators.
Run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a claude-code`. Or copy the skill folder (tools/dpdata-driver in jinzhezenggroup/computational-chemistry-agent-skills) into .claude/skills/dpdata-driver in your project. Claude Code loads it when a task matches its description.
Run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a codex`. Or copy the skill folder (tools/dpdata-driver in jinzhezenggroup/computational-chemistry-agent-skills) into .agents/skills/dpdata-driver in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add jinzhezenggroup/computational-chemistry-agent-skills --skill dpdata-driver -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/dpdata-driver, .gemini/skills/dpdata-driver, .github/skills/dpdata-driver and .opencode/skills/dpdata-driver in your project.
Going by SKILL.md and its folder, Dpdata Driver needs the command-line tools its instructions call (uv). Our summary lists: Python 3. Compatibility (from SKILL.md): Requires dpdata or uv for running dpdata.
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Dpdata Driver is published under the LGPL-3.0-or-later licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.
About 1k tokens (SKILL.md is roughly 4.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Dpdata Driver: MCP Server Builder (anthropics/skills, 180k stars), PDF Processing (anthropics/skills, 180k stars), NotebookLM Research Assistant (PleasePrompto/notebooklm-skill, 7.8k stars) and Manim Video Production (browser-use/video-use, 29k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
jinzhezenggroup (a GitHub organization) maintains it in jinzhezenggroup/computational-chemistry-agent-skills, which has 148 GitHub stars. The repository holds 62 skills in this directory. The repository was last updated on October 9, 2026.
Source: jinzhezenggroup/computational-chemistry-agent-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.