Add Bactopia Tool
bactopia/bactopia
Scaffold a complete Bactopia Tool across all three tiers -- module, subworkflow, and workflow entry point under workflows/bactopia-tools/.
CD-GPT 生成式生物基础大模型，对 DNA/RNA/蛋白质序列预训练，支持单分子与多分子联合分析的预测与生成. An agent skill from infometa/workbuddyskills.
Install Cdgpt Collection Skill
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skill --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .claude/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .claude/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skillType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skill --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .agents/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .agents/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skill --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .cursor/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .cursor/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/infometa/workbuddyskills.git --path experts/omics-cdgpt-expert/skills/cdgpt-collection-skill--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skill --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .gemini/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .gemini/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skillInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .github/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .github/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .github/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install infometa/workbuddyskills cdgpt-collection-skill --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/infometa/workbuddyskills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill .opencode/skills/cdgpt-collection-skill && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "cdgpt-collection-skill" agent skill from https://github.com/infometa/workbuddyskills/tree/main/experts/omics-cdgpt-expert/skills/cdgpt-collection-skill into .opencode/skills/cdgpt-collection-skill/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "cdgpt-collection-skill", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
cdgpt-collection-skill- GitHub stars
- 348
- Token cost
- ~5k tokens
- SKILL.md length
- 937 words
- Files
- 8 (incl. scripts, references)
- Skills in repo
- 218
- Repo updated
- First seen
- Licence
- None found
At a glance
CD-GPT 生成式生物基础大模型，对 DNA/RNA/蛋白质序列预训练，支持单分子与多分子联合分析的预测与生成. An agent skill from infometa/workbuddyskills.
- Works in 8 steps: ：鉴权与配置双重检查 → ：登录授权 → ：配置引导 → …
- Tasks that involve Reproducible research
- SKILL.md covers 合集锁定参数（SKILL 内部硬编码，禁止覆盖）, 子应用清单（硬编码 · 禁止运行时修改）, 能力边界 and 退出码 & 鉴权失败处理, plus 9 more sections
- Runs Python scripts from its folder; calls python3; reaches cloud.tencent.com
What it does
Cdgpt Collection Skill is an agent skill from infometa/workbuddyskills. CD-GPT 生成式生物基础大模型，对 DNA/RNA/蛋白质序列预训练，支持单分子与多分子联合分析的预测与生成。
Its SKILL.md is about 5k tokens, which your agent loads only when the skill is triggered. The skill folder holds 9 other files, including scripts and reference files (for example `CONTRACT.md`, `references/cli-whitelist.md` and `references/omics-cli-setup.md`).
It sits in Research & Science, covering Reproducible research. It works with Nextflow. The repository describes itself as: WorkBuddy skills / connectors / experts archive for offline study.
When your agent uses it
- Tasks that involve Reproducible research
Example prompts
- “/cdgpt-collection-skill”
Requirements
- Python 3
Workflow steps
8 steps, taken from the step headings in SKILL.md.
- ：鉴权与配置双重检查
- ：登录授权
- ：配置引导
- ：子应用选择（从硬编码清单中匹配，无需展开）
- ：运行前准备（必经）
- ：运行（仅形态 B · 公共应用）
- ：状态查询
- ：异步失败取证（debug 三段式）
What it can do on your machine
Read from SKILL.md and the folder at commit 91b77ea. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Ships 1 file in scripts/ (Python), which the agent can run.
Shell commands in SKILL.md call:
python3
From the folder's file list and the shell code blocks in SKILL.md.
Network
Hosts in commands or code, which the agent is likely to contact:
cloud.tencent.com
Also links to:
console.cloud.tencent.comomics.qq.com
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Cdgpt Collection Skill loads about 5k tokens when it runs, and up to ~24k if it reads all its reference files. Until then it costs about 20 tokens; SKILL.md has 937 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); the scripts in this folder are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 937 words (~5,045 tokens).
- name
- cdgpt-collection-skill
- triggers
- 多分子联合分析的预测, CD-GPT Collection (Nextflow), cd-gpt collection (nextflow), cd-gpt-collection-(nextflow), cd-gpt_collection_(nextflow)…
- platform
- 腾讯健康组学平台(Omics)
- tags
- 行业专业, 生信分析, 生物医药, omics, 腾讯健康组学平台, public-app, collection
- version
- 1.0.0
Files
SKILL.md and 7 other files (scripts, references) in experts/omics-cdgpt-expert/skills/cdgpt-collection-skill of infometa/workbuddyskills.
- SKILL.md
- CONTRACT.md
- references/cli-whitelist.md
- references/omics-cli-setup.md
- references/run-flow-spec.md
- references/runtime_error_kb.md
- references/skill-template.md
- scripts/omics_cli.py
Open the folder on GitHubat commit 91b77ea
Compare with similar skills
Cdgpt Collection Skill next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Cdgpt Collection Skill this skillinfometa/workbuddyskills | 348 | — | ~5k | Automated safety check: Pass | None | |
| Add Bactopia Toolbactopia/bactopia | 522 | — | ~4.1k | Automated safety check: Pass | MIT | |
| Bump Versionsbactopia/bactopia | 522 | — | ~1.3k | Automated safety check: Pass | MIT | |
| Merge Schemasbactopia/bactopia | 522 | — | ~1.3k | Automated safety check: Pass | MIT | |
| LaminDB Biological Data Managementdavila7/claude-code-templates | 33k | 12 repos | ~3.6k | Automated safety check: Pass | MIT | |
| Latchbio Integrationdavila7/claude-code-templates | 33k | 11 repos | ~2.4k | Automated safety check: Pass | MIT |
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Bump Versions
bactopia/bactopia
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Merge Schemas
bactopia/bactopia
Regenerate nextflow.config and nextflowschema.json for Bactopia workflows by running bactopia-merge-schemas.
LaminDB Biological Data Management
davila7/claude-code-templates
Manages biological datasets with LaminDB: versioned artifacts, run lineage, ontology-based annotation, schema validation and links to workflow managers and ML tools.
Latchbio Integration
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Latch platform for bioinformatics workflows. An agent skill from davila7/claude-code-templates.
Review Docs
bactopia/bactopia
Review staleness of reference docs under .agents/docs/ using bactopia-docs --validate.
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Works with
Categories
Questions about Cdgpt Collection Skill
What does Cdgpt Collection Skill do?
CD-GPT 生成式生物基础大模型，对 DNA/RNA/蛋白质序列预训练，支持单分子与多分子联合分析的预测与生成. An agent skill from infometa/workbuddyskills. Cdgpt Collection Skill is an agent skill from infometa/workbuddyskills.
When should I use Cdgpt Collection Skill?
Cdgpt Collection Skill fits situations like: tasks that involve Reproducible research.
How do I install Cdgpt Collection Skill in Claude Code?
Run `npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a claude-code`. Or copy the skill folder (experts/omics-cdgpt-expert/skills/cdgpt-collection-skill in infometa/workbuddyskills) into .claude/skills/cdgpt-collection-skill in your project. Claude Code loads it when a task matches its description.
How do I install Cdgpt Collection Skill in Codex?
Run `npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a codex`. Or copy the skill folder (experts/omics-cdgpt-expert/skills/cdgpt-collection-skill in infometa/workbuddyskills) into .agents/skills/cdgpt-collection-skill in your project. Codex loads it when a task matches its description.
Can I use Cdgpt Collection Skill in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add infometa/workbuddyskills --skill cdgpt-collection-skill -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/cdgpt-collection-skill, .gemini/skills/cdgpt-collection-skill, .github/skills/cdgpt-collection-skill and .opencode/skills/cdgpt-collection-skill in your project.
What does Cdgpt Collection Skill need to run?
Going by SKILL.md and its folder, Cdgpt Collection Skill needs Python for the scripts in its folder and the command-line tools its instructions call (python3). Our summary lists: Python 3.
Does Cdgpt Collection Skill access the network?
SKILL.md names 3 domains. In commands or code: cloud.tencent.com; the agent is likely to contact it when it follows the instructions. As links in the text: console.cloud.tencent.com and omics.qq.com. This is read from the text; nothing was executed.
Is Cdgpt Collection Skill safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. The check reads SKILL.md only: the scripts in the folder are not scanned, so read them before running anything.
What licence does Cdgpt Collection Skill use?
No licence was found for Cdgpt Collection Skill or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Cdgpt Collection Skill use?
About 5k tokens (SKILL.md is roughly 20k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 19k tokens, read only when the agent opens those files.
What are the alternatives to Cdgpt Collection Skill?
Skills that share tags, products or a category with Cdgpt Collection Skill: Add Bactopia Tool (bactopia/bactopia, 522 stars), Bump Versions (bactopia/bactopia, 522 stars), Merge Schemas (bactopia/bactopia, 522 stars) and LaminDB Biological Data Management (davila7/claude-code-templates, 33k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Cdgpt Collection Skill?
infometa (a GitHub user) maintains it in infometa/workbuddyskills, which has 348 GitHub stars. The repository holds 218 skills in this directory. The repository was last updated on October 9, 2026.
Source: infometa/workbuddyskills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.