Alphagenome Single Variant Analysis
google-deepmind/science-skills
Analyzes genetic variant effects on gene expression (RNA-seq), chromatin accessibility (DNASE), histone marks (ChIP), and transcription factors using the AlphaGenome API.
A skill your agent uses when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue.
Install Genome Biology
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install franklee16/academic-research-skills genome-biology --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .claude/skills/genome-biology && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .claude/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biologyType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install franklee16/academic-research-skills genome-biology --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .agents/skills/genome-biology && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .agents/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install franklee16/academic-research-skills genome-biology --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .cursor/skills/genome-biology && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .cursor/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/franklee16/academic-research-skills.git --path Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install franklee16/academic-research-skills genome-biology --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .gemini/skills/genome-biology && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .gemini/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install franklee16/academic-research-skills genome-biologyInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .github/skills/genome-biology && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .github/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add franklee16/academic-research-skills --skill genome-biology -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install franklee16/academic-research-skills genome-biology --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology .opencode/skills/genome-biology && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "genome-biology" agent skill from https://github.com/franklee16/academic-research-skills/tree/master/Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology into .opencode/skills/genome-biology/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "genome-biology", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
genome-biology- GitHub stars
- 223
- Used in
- 1 other repo
- Token cost
- ~1.9k tokens
- SKILL.md length
- 823 words
- Files
- 1
- Skills in repo
- 1,617
- Repo updated
- First seen
- Licence
- None found
At a glance
A skill your agent uses when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue.
- Targeting Genome Biology
- SKILL.md covers Journal positioning, When to trigger, Scope & topic fit and Method & evidence bar, plus 6 more sections
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
- Deciding whether a genomics
What it does
Genome Biology is an agent skill from franklee16/academic-research-skills. Use when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue. Encodes the journal's fit, framing, method-and-evidence bar, house style, official-submission re-check, and desk-reject heuristics.
Its SKILL.md is about 1.9k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Bioinformatics. The repository describes itself as: Comprehensive collection of Claude Code skills for academic research in economics, finance, and social sciences.
When your agent uses it
- Targeting Genome Biology
- Deciding whether a genomics
- Computational biology manuscript fits this venue
Example prompts
- “/genome-biology”
Requirements
- Docker
What it can do on your machine
Read from SKILL.md and the folder at commit 9a4b2db. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md.
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Genome Biology loads about 1.9k tokens when it runs. Until then it costs about 66 tokens; SKILL.md has 823 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
Without a licence we can't republish the file, so here is its outline and opening line. It has 823 words (~1,932 tokens).
“Genome Biology, published by BioMed Central (Springer Nature), is a leading open-access journal at the intersection of genomics, computational biology, and quantitative biological methods. It specializes in studies that combine large-scale genomic or epigenomic data with new computational tools, statistical…”
- name
- genome-biology
Files
Just SKILL.md in Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology of franklee16/academic-research-skills.
Open the folder on GitHubat commit 9a4b2db
Used in 1 other repository
We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in franklee16/academic-research-skills, which our catalogue first saw on October 7, 2026.
Compare with similar skills
Genome Biology next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Genome Biology this skillfranklee16/academic-research-skills | 223 | 1 repos | ~1.9k | Automated safety check: Pass | None | |
| Alphagenome Single Variant Analysisgoogle-deepmind/science-skills | 3.2k | 2 repos | ~3k | Automated safety check: Notes | Apache-2.0 | |
| 13C Metabolic Flux AnalysisK-Dense-AI/scientific-agent-skills | 48k | 1 repos | ~3.2k | Automated safety check: Pass | MIT | |
| Clinvar Databasegoogle-deepmind/science-skills | 3.2k | 2 repos | ~3.9k | Automated safety check: Notes | Apache-2.0 | |
| Metabolic Study Planneraiming-lab/AutoResearchClaw | 15k | — | ~1.9k | Automated safety check: Pass | MIT | |
| Dbsnp Databasegoogle-deepmind/science-skills | 3.2k | 2 repos | ~3.4k | Automated safety check: Notes | Apache-2.0 |
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Dbsnp Database
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Related
Categories
Questions about Genome Biology
What does Genome Biology do?
A skill your agent uses when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue. Genome Biology is an agent skill from franklee16/academic-research-skills. Use when targeting Genome Biology or deciding whether a genomics or computational biology manuscript fits this venue.
When should I use Genome Biology?
Genome Biology fits situations like: targeting Genome Biology; deciding whether a genomics; computational biology manuscript fits this venue.
How do I install Genome Biology in Claude Code?
Run `npx skills add franklee16/academic-research-skills --skill genome-biology -a claude-code`. Or copy the skill folder (Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology in franklee16/academic-research-skills) into .claude/skills/genome-biology in your project. Claude Code loads it when a task matches its description.
How do I install Genome Biology in Codex?
Run `npx skills add franklee16/academic-research-skills --skill genome-biology -a codex`. Or copy the skill folder (Awesome-Journal-Skills-main/English-NaturalScience-Journal-Skills/skills/genome-biology in franklee16/academic-research-skills) into .agents/skills/genome-biology in your project. Codex loads it when a task matches its description.
Can I use Genome Biology in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add franklee16/academic-research-skills --skill genome-biology -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/genome-biology, .gemini/skills/genome-biology, .github/skills/genome-biology and .opencode/skills/genome-biology in your project.
What does Genome Biology need to run?
SKILL.md names no scripts, command-line tools or credentials: Genome Biology is instructions for the agent only. Our summary lists: Docker.
Does Genome Biology access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Genome Biology safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Genome Biology use?
No licence was found for Genome Biology or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
How many tokens does Genome Biology use?
About 1.9k tokens (SKILL.md is roughly 7.7k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Genome Biology?
Skills that share tags, products or a category with Genome Biology: Alphagenome Single Variant Analysis (google-deepmind/science-skills, 3.2k stars), 13C Metabolic Flux Analysis (K-Dense-AI/scientific-agent-skills, 48k stars), Clinvar Database (google-deepmind/science-skills, 3.2k stars) and Metabolic Study Planner (aiming-lab/AutoResearchClaw, 15k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Genome Biology?
franklee16 (a GitHub user) maintains it in franklee16/academic-research-skills, which has 223 GitHub stars. The repository holds 1,617 skills in this directory. The repository was last updated on September 18, 2026.
Source: franklee16/academic-research-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.