Agent skill

Cell Workflow

by franklee16 in franklee16/academic-research-skills

A skill your agent uses when deciding which cell- sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press).

No licenceAuto-check passed

Install Cell Workflow

skills CLI
$ npx skills add franklee16/academic-research-skills --skill cell-workflow -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI
$ gh skill install franklee16/academic-research-skills cell-workflow --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy
$ git clone --depth 1 https://github.com/franklee16/academic-research-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/Awesome-Journal-Skills-main/Cell-Skills/skills/cell-workflow .claude/skills/cell-workflow && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Facts

Skill name
cell-workflow
GitHub stars
223
Used in
1 other repo
Token cost
~1.5k tokens
SKILL.md length
702 words
Files
1
Skills in repo
1,616
Repo updated
First seen
Licence
None found

At a glance

A skill your agent uses when deciding which cell- sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press).

  • Works in 11 steps: cell-fit — clear the… → cell-framing — lock the single narrative… → cell-writing — Article structure and… → …
  • Deciding which cell- sub-skill to invoke next
  • SKILL.md covers Overview, The single most important idea…, When to trigger and The single most important gate, plus 5 more sections
  • Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md

What it does

Cell Workflow is an agent skill from franklee16/academic-research-skills. Use when deciding which cell- sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press). Routes — it does not replace — the specialized skills.

Its SKILL.md is about 1.5k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.

The repository describes itself as: Comprehensive collection of Claude Code skills for academic research in economics, finance, and social sciences.

When your agent uses it

  • Deciding which cell- sub-skill to invoke next
  • Sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press)

Example prompts

  • “/cell-workflow”

Workflow steps

11 steps, taken from the first numbered list in SKILL.md.

  1. cell-fit — clear the complete-mechanistic-story bar first
  2. cell-framing — lock the single narrative arc (hypothesis → mechanism → significance)
  3. cell-writing — Article structure and length discipline
  4. cell-figures — finalize display items within budget
  5. cell-star-methods — Key Resources Table + Resource Availability + QSA
  6. cell-data — data / code deposition and the availability statement
  7. cell-summary — the ≤150-word Summary (late polish)
  8. cell-highlights — Highlights + eTOC blurb + Graphical Abstract (late polish)
  9. cell-citation — author–date reference pass
  10. cell-submission — cover letter + preflight
  11. cell-rebuttal — after review

What it can do on your machine

Read from SKILL.md and the folder at commit 9a4b2db. It shows what the files ask for, not the result of running them.

  • Tool permissions

    Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.

    From allowed-tools in the SKILL.md frontmatter.

  • Runs code

    No scripts in the folder and no shell commands in SKILL.md.

    From the folder's file list and the shell code blocks in SKILL.md.

  • Network

    No URLs in SKILL.md.

    From URLs in SKILL.md, links to its own repository left out.

  • Credentials

    Names no API keys, tokens, secrets or passwords.

    From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.

Context cost

Cell Workflow loads about 1.5k tokens when it runs. Until then it costs about 57 tokens; SKILL.md has 702 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it
~57
When it runs · the whole SKILL.md, loaded when a task matches
~1.5k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

Without a licence we can't republish the file, so here is its outline and opening line. It has 702 words (~1,503 tokens).

“This is the router. It does not replace any specialized skill. It tells you which cell-* skill to use at the current stage of a manuscript aimed at Cell (Cell Press).”

— opening of SKILL.md by franklee16
name
cell-workflow

Read the full SKILL.md on GitHub

Files

Just SKILL.md in Awesome-Journal-Skills-main/Cell-Skills/skills/cell-workflow of franklee16/academic-research-skills.

Open the folder on GitHubat commit 9a4b2db

Used in 1 other repository

We found 1 copy of this SKILL.md (exact, near-identical or edited) in other folders, from 1 other GitHub owner. This page covers the copy in franklee16/academic-research-skills, which our catalogue first saw on October 7, 2026.

Compare with similar skills

Cell Workflow next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Cell Workflow compared with similar skills
SkillStarsUsed inTokensAuto-checkLicenceRepo updated
Cell Workflow this skillfranklee16/academic-research-skills2231 repos~1.5kAutomated safety check: PassNone
Sub SkillMoonshotAI/kimi-code7.8k—~281Automated safety check: PassMIT
Sub Agentsparcadei/Continuous-Claude-v33.9k2 repos~929Automated safety check: NotesMIT
Offensive Lorawan Sub GhzSnailSploit/Claude-Red7.3k—~1.7kAutomated safety check: PassMIT
Create Invoke TaskDataDog/datadog-agent3.8k—~606Automated safety check: NotesApache-2.0
Sub-Agent DelegationTokenRhythm/opensquilla7.1k—~3kAutomated safety check: PassApache-2.0

Similar skills

  • Sub Skill

    MoonshotAI/kimi-code

    Discover and reorganize the skill inventory into hierarchical sub-skill bundles.

    7.8k GitHub stars~281 tokensUpdated today
    DevelopmentAuto-check passed
  • Sub Agents

    parcadei/Continuous-Claude-v3

    Create and configure Claude Code sub-agents with custom prompts, tools, and models

    3.9k GitHub starsUsed in 2 repos~929 tokens
    Agent WorkflowsAuto-check: notes
  • Offensive Lorawan Sub Ghz

    SnailSploit/Claude-Red

    LoRaWAN and sub-GHz (433 / 868 / 915 MHz) attack methodology — LoRaWAN ABP/OTAA join attack, network/session key reuse, frame counter replay, downlink injection on TTN/Helium-style networks, sub-GHz…

    7.3k GitHub stars~1.7k tokensUpdated 18 days ago
    DevOps & CloudAuto-check passed
  • Create Invoke Task

    DataDog/datadog-agent

    Official

    Create a new Python invoke task for the dda CLI. An agent skill from DataDog/datadog-agent.

    3.8k GitHub stars~606 tokensUpdated today
    Auto-check: notes
  • Sub-Agent Delegation

    TokenRhythm/opensquilla

    Hands a self-contained coding task to Codex, Claude Code, OpenCode or Pi as a non-interactive background process, using OpenSquilla's exec_command and process tools.

    7.1k GitHub stars~3k tokensUpdated 3 days ago
    Agent WorkflowsAuto-check passed
  • Launch Sub Agent

    NeoLabHQ/context-engineering-kit

    Launch an intelligent sub-agent with automatic model selection based on task complexity, specialized agent matching, Zero-shot CoT reasoning, and mandatory self-critique verification

    1.7k GitHub stars~3k tokensUpdated 1 mo ago
    Agent WorkflowsAuto-check passed

More from franklee16/academic-research-skills

All 1,616 skills in this repo
  • Econometric Research Writing

    franklee16/academic-research-skills

    End-to-end econometric analysis and economics/management paper-writing workflow.

    223 GitHub stars~2.4k tokensUpdated 20 days ago
    Auto-check passed
  • Paper Revision

    franklee16/academic-research-skills

    Comprehensive workflow for handling journal Revise and Resubmit (R&R) decisions.

    223 GitHub stars~3.4k tokensUpdated 20 days ago
    Auto-check passed
  • Sci Ssci Polishing

    franklee16/academic-research-skills

    A skill your agent uses when researchers need Chinese academic prose translated into publication-oriented English or English manuscript paragraphs and complete sections polished for SCI, SSCI, or…

    223 GitHub starsUsed in 1 repo~1.5k tokens
    Auto-check passed
  • Research Defense Radar

    franklee16/academic-research-skills

    Assess and monitor an ongoing research project's competitor landscape, novelty risk, and method/data opportunities from a proposal, paper, research question, data or method notes, or a suspected…

    223 GitHub stars~4k tokensUpdated 20 days ago
    Auto-check passed
  • Academic Grant

    franklee16/academic-research-skills

    Generate or fill in academic grant application forms (project statement, education plan, pathway to impact, references) using draft research material.

    223 GitHub stars~2.8k tokensUpdated 20 days ago
    Auto-check: notes
  • Chinese Reference Formatter Skill

    franklee16/academic-research-skills

    A skill your agent uses when a user needs通用中文参考文献、GB/T 7714-style bibliography entries, Chinese academic reference formatting, or BibTeX completion from Chinese or English literature titles…

    223 GitHub stars~1.1k tokensUpdated 20 days ago
    Auto-check passed

Questions about Cell Workflow

What does Cell Workflow do?

A skill your agent uses when deciding which cell- sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press). Cell Workflow is an agent skill from franklee16/academic-research-skills. Use when deciding which cell- sub-skill to invoke next, or when sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press).

When should I use Cell Workflow?

Cell Workflow fits situations like: deciding which cell- sub-skill to invoke next; sequencing a manuscript from significance test through reviewer rebuttal for Cell (Cell Press).

How do I install Cell Workflow in Claude Code?

Run `npx skills add franklee16/academic-research-skills --skill cell-workflow -a claude-code`. Or copy the skill folder (Awesome-Journal-Skills-main/Cell-Skills/skills/cell-workflow in franklee16/academic-research-skills) into .claude/skills/cell-workflow in your project. Claude Code loads it when a task matches its description.

How do I install Cell Workflow in Codex?

Run `npx skills add franklee16/academic-research-skills --skill cell-workflow -a codex`. Or copy the skill folder (Awesome-Journal-Skills-main/Cell-Skills/skills/cell-workflow in franklee16/academic-research-skills) into .agents/skills/cell-workflow in your project. Codex loads it when a task matches its description.

Can I use Cell Workflow in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add franklee16/academic-research-skills --skill cell-workflow -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/cell-workflow, .gemini/skills/cell-workflow, .github/skills/cell-workflow and .opencode/skills/cell-workflow in your project.

What does Cell Workflow need to run?

SKILL.md names no scripts, command-line tools or credentials: Cell Workflow is instructions for the agent only.

Does Cell Workflow access the network?

SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.

Is Cell Workflow safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Cell Workflow use?

No licence was found for Cell Workflow or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.

How many tokens does Cell Workflow use?

About 1.5k tokens (SKILL.md is roughly 6k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Cell Workflow?

Skills that share tags, products or a category with Cell Workflow: Sub Skill (MoonshotAI/kimi-code, 7.8k stars), Sub Agents (parcadei/Continuous-Claude-v3, 3.9k stars), Offensive Lorawan Sub Ghz (SnailSploit/Claude-Red, 7.3k stars) and Create Invoke Task (DataDog/datadog-agent, 3.8k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Cell Workflow?

franklee16 (a GitHub user) maintains it in franklee16/academic-research-skills, which has 223 GitHub stars. The repository holds 1,616 skills in this directory. The repository was last updated on September 18, 2026.

Source: franklee16/academic-research-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.