Agent skill

Chromadb

by EliasOulkadi in EliasOulkadi/shokunin

Manage the ChromaDB vector database that stores the ecosystem's persistent memory.

MITAuto-check passedDatabases

Install Chromadb

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a claude-code

Project install by default; add -g for ~/.claude/skills/.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb --agent claude-code

Project scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .claude/skills && cp -r skills-src/.pack/skills/chromadb .claude/skills/chromadb && rm -rf skills-src

Use ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.

Claude Code skills documentation · loads skills from .claude/skills/

Paste into Claude Code

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .claude/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

$skill-installer

$skill-installer install https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb

Type this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a codex

Project install goes to .agents/skills/; add -g for ~/.codex/skills/.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb --agent codex

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .agents/skills && cp -r skills-src/.pack/skills/chromadb .agents/skills/chromadb && rm -rf skills-src

Use ~/.agents/skills/ instead of .agents/skills for a personal install.

Codex skills documentation · loads skills from .agents/skills/

Paste into Codex

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .agents/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a cursor

Project install goes to .agents/skills/; add -g for ~/.cursor/skills/.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb --agent cursor

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/.pack/skills/chromadb .cursor/skills/chromadb && rm -rf skills-src

Use ~/.cursor/skills/ instead of .cursor/skills for a personal install.

Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/

Paste into Cursor

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .cursor/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

gemini skills install

$ gemini skills install https://github.com/EliasOulkadi/shokunin.git --path .pack/skills/chromadb

--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a gemini-cli

Project install goes to .agents/skills/; add -g for ~/.gemini/skills/.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb --agent gemini-cli

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/.pack/skills/chromadb .gemini/skills/chromadb && rm -rf skills-src

Use ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.

Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/

Paste into Gemini CLI

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .gemini/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb

Installs for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a github-copilot

Project install goes to .agents/skills/; add -g for ~/.copilot/skills/.

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .github/skills && cp -r skills-src/.pack/skills/chromadb .github/skills/chromadb && rm -rf skills-src

Use ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.

GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/

Paste into GitHub Copilot

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .github/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

skills CLI

$ npx skills add EliasOulkadi/shokunin --skill chromadb -a opencode

OpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.

GitHub CLI

$ gh skill install EliasOulkadi/shokunin chromadb --agent opencode

Project scope by default (.agents/skills/); add --scope user for a personal install.

Manual copy

$ git clone --depth 1 https://github.com/EliasOulkadi/shokunin.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/.pack/skills/chromadb .opencode/skills/chromadb && rm -rf skills-src

Use ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.

OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/

Paste into OpenCode

Install the "chromadb" agent skill from https://github.com/EliasOulkadi/shokunin/tree/master/.pack/skills/chromadb into .opencode/skills/chromadb/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "chromadb", then confirm the skill loads.

OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.

Facts

Skill name: chromadb
GitHub stars: 114
Token cost: ~2.2k tokens
SKILL.md length: 737 words
Files: 1
Skills in repo: 49
Repo updated: Oct 5, 2026
First seen: Oct 7, 2026
Licence: MIT

At a glance

Manage the ChromaDB vector database that stores the ecosystem's persistent memory.

Works in 6 steps: Check storage status → Search stored entries → List recent entries → …
User asks to check memory storage
SKILL.md covers Workflow, Storage Details, Data Model and Session Management, plus 6 more sections
Calls python and pip

What it does

Chromadb is an agent skill from EliasOulkadi/shokunin. Manage the ChromaDB vector database that stores the ecosystem's persistent memory. Use when user asks to check memory storage, backup memory, search stored entries, delete entries, or reset the vector database. Do NOT use for general question answering about past sessions (use the memory skill for that).

Its SKILL.md is about 2.2k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts. Compatibility notes: opencode

It sits in Databases, covering Vector databases, Agent memory and Embeddings. It works with Chroma and Model Context Protocol. The repository describes itself as: 職人 Shokunin 62 AI agent skills for OpenCode, Claude Code, Cursor, Windsurf. ChromaDB memory, MCP servers, declarative self-updates. Multi-model, open source, zero cost. The licence is MIT.

When your agent uses it

User asks to check memory storage
Search stored entries
Reset the vector database
General question answering about past sessions (use the memory skill for that)

Example prompts

“/chromadb”

Requirements

Python 3
Compatibility (from SKILL.md): opencode

Workflow steps

6 steps, taken from the step headings in SKILL.md.

Check storage status
Search stored entries
List recent entries
Backup the database
Delete entries by session prefix
Full reset (requires confirmation)

What it can do on your machine

Read from SKILL.md and the folder at commit 4c68e5b. It shows what the files ask for, not the result of running them.

Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
Shell commands in SKILL.md call:
- python
- pip
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md. Its commands use pip, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Compatibility
opencode
From compatibility in the SKILL.md frontmatter.

Context cost

Chromadb loads about 2.2k tokens when it runs. Until then it costs about 79 tokens; SKILL.md has 737 words of instructions outside code blocks.

Always · name and description, kept in context so the agent knows when to use it: ~79
When it runs · the whole SKILL.md, loaded when a task matches: ~2.2k

Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.

Safety

Auto-check passed

The automated check found no risky patterns in SKILL.md.

Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.

SKILL.md

The full file from EliasOulkadi/shokunin at commit 4c68e5b, republished under its MIT licence (© EliasOulkadi). 737 words, ~2,218 tokens.

Download SKILL.mdSave it as .claude/skills/chromadb/SKILL.md (or your agent's skills folder).

name: chromadb
description: Manage the ChromaDB vector database that stores the ecosystem's persistent memory. Use when user asks to check memory storage, backup memory, search stored entries, delete entries, or reset the vector database. Do NOT use for general question answering about past sessions (use the memory skill for that).
compatibility: opencode
triggers: manage memory, memory status, memory backup, memory delete, memory reset, ChromaDB status, check storage, delete entry, backup database, reset database
negatives: search memory, query context, save context, verify file, context recall, remember past
license: MIT
metadata.workflow: administration
metadata.audience: developers
metadata.version: 4.2.2

chromadb · Memory Storage

ChromaDB is the vector database that powers Shokunin's persistent AI memory. It stores embeddings for semantic search across sessions. Built on SQLite with an ONNX embedding model for local-first, offline-capable operation.

Workflow

Step 1: Check storage status

powershell

python ~/.shokunin/scripts/chroma-helper.py count

Output: total entries, collection count, disk size on disk, last write timestamp.

powershell

python ~/.shokunin/scripts/chroma-helper.py stats

Output: entries per type (decision, file, command, checkpoint, session_end), per project, per date range.

Step 2: Search stored entries

powershell

python ~/.shokunin/scripts/chroma-helper.py search "query text" "project-name" 10

Searches via vector similarity + BM25 keyword hybrid. Results sorted by relevance with metadata attached.

powershell

python ~/.shokunin/scripts/chroma-helper.py search "error handling" "" 20 --type decision

Filter by entry type. Leave project empty to search all projects.

Step 3: List recent entries

powershell

python ~/.shokunin/scripts/chroma-helper.py recent 10

Shows the 10 most recently inserted entries across all projects. Use for quick audit.

powershell

python ~/.shokunin/scripts/chroma-helper.py recent 50 --project myproject

Filter recent entries to a specific project.

Step 4: Backup the database

powershell

$backupDir = "$env:USERPROFILE\.shokunin\backups\chroma-$(Get-Date -Format 'yyyyMMdd-HHmmss')"
New-Item -ItemType Directory -Path $backupDir -Force | Out-Null
Compress-Archive -Path "$env:USERPROFILE\.shokunin\memory\chroma_db" -DestinationPath "$backupDir\chroma_db.zip" -Force

Also back up session logs:

powershell

Compress-Archive -Path "$env:USERPROFILE\.shokunin\memory\sessions" -DestinationPath "$backupDir\sessions.zip" -Force

Verify backup integrity:

powershell

Add-Type -AssemblyName System.IO.Compression.FileSystem
[System.IO.Compression.ZipFile]::OpenRead("$backupDir\chroma_db.zip").Entries.Count

Step 5: Delete entries by session prefix

powershell

python ~/.shokunin/scripts/chroma-helper.py delete "session-prefix"

Deletes all entries whose session_id starts with the given prefix. Non-reversible. Backup first.

powershell

python ~/.shokunin/scripts/chroma-helper.py delete --project "old-project"

Delete all entries for a project. Useful when archiving finished projects.

Step 6: Full reset (requires confirmation)

powershell

Remove-Item -Recurse -Force "$env:USERPROFILE\.shokunin\memory\chroma_db"
# Restart MCP server to recreate the database

The database is auto-created on next MCP server startup. All sessions, embeddings, and metadata are permanently lost. Only do this when migrating or recovering from corruption.

Storage Details

Location	Purpose
`~/.shokunin/memory/chroma_db/`	ChromaDB persistent files (SQLite + embeddings)
`~/.shokunin/memory/sessions/`	Per-session JSONL logs and Markdown summaries
`~/.shokunin/memory/mcp-server.log`	MCP server log file (auto-rotated at 5MB)
`~/.shokunin/backups/`	Timestamped backup archives
`~/.shokunin/scripts/chroma-helper.py`	CLI management script

Data Model

Concept	Description
Collection	ChromaDB namespace for embeddings (one per project by default)
Embedding	Vector representation of text for semantic similarity search
Metadata	Key-value pairs attached to each entry (type, tags, project, session_id, timestamp)
Document	The raw text content stored alongside the embedding
BM25 Index	Sparse retrieval index that complements vector search (keyword matching)
Result Fusion	Merges vector + BM25 results for higher recall (reciprocal rank fusion)
Entry Types	decision, file, command, preference, checkpoint, session_end, general

Session Management

Command	Description
`python ~/.shokunin/scripts/chroma-helper.py session list [N]`	List recent sessions with metadata
`python ~/.shokunin/scripts/chroma-helper.py session continue <id>`	Load full session context
`python ~/.shokunin/scripts/chroma-helper.py session summary <id>`	Show session summary
`python ~/.shokunin/scripts/chroma-helper.py save "<text>" "<id>" "<type>" "<tags>" "<project>"`	Save entry

Error Handling

Error	Cause	Fix
ChromaDB not found	Package not installed	`pip install chromadb`
Collection empty	No data stored yet	Normal on first use. Start storing context.
Slow first query	Downloading ONNX model	First query downloads ~79MB. Subsequent queries are instant.
Permission denied	File locked by another process	Close other MCP server instances
Corrupted database	Unexpected shutdown or disk full	Restore from backup or delete and let the system reinitialize
Memory usage high	Large collection over time	Run `consolidate_memories` to merge old entries
Embedding dimension mismatch	Model was upgraded or changed	Delete chroma_db/ and reindex from session logs
UUID collision	Race condition in parallel writes	ChromaDB handles this internally; retry the insert
SQLite disk I/O error	Filesystem full or read-only	Free disk space (need ~2x DB size); check permissions

Show full SKILL.md (260 more words)Show less

Anti-Patterns

Pattern	Problem	Fix
Deleting `chroma_db/` without backup	Permanent data loss	Always backup first (Step 4)
Running multiple MCP servers	Database locked, data corruption	Only one MCP server instance at a time
Manual SQL manipulation	Breaks ChromaDB invariants	Use chroma-helper.py CLI or MCP tools only
Ignoring session_list filters	Seeing test/healthcheck entries	session_list automatically filters noise
Storing extremely large text	Bloating vector index	ChromaDB truncates at 500 chars
Never consolidating	Database grows indefinitely	Run `consolidate_memories` periodically
Skipping backups	No recovery from disk failure	Weekly backup is configured via Task Scheduler
Using raw SQLite instead of ChromaDB API	Schema and index corruption	Always go through ChromaDB's Python client
Searching without project filter for broad queries	Too many irrelevant results	Always filter by project when context is known

Automation

Weekly backup every Sunday via Windows Task Scheduler (pre-configured). Manual backup via Step 4 above. Logs auto-rotate at 5MB to prevent unbounded growth. The consolidate_memories function runs automatically when entry count exceeds 10,000 per project.

Recovery Procedures

Restore from backup

powershell

$backup = Get-ChildItem "$env:USERPROFILE\.shokunin\backups" -Directory | Sort-Object LastWriteTime -Descending | Select-Object -First 1
Expand-Archive -Path "$backup\chroma_db.zip" -DestinationPath "$env:USERPROFILE\.shokunin\memory\chroma_db" -Force

Rebuild from session logs

If backups are unavailable, session JSONL logs contain all raw text. Replay them:

powershell

python ~/.shokunin/scripts/chroma-helper.py rebuild --from-sessions

Verify database health

powershell

python ~/.shokunin/scripts/chroma-helper.py verify

Checks: SQLite integrity, embedding count vs document count, orphan metadata, collection schema version.

Checklist

ChromaDB client initialized lazily (not at import time)
Collection name sanitized (alphanumeric + hyphens only)
Embedding dimension matches between writes and queries
Backups configured before destructive operations (delete/reset)
Search results validated — empty results handled gracefully

Sources

ChromaDB documentation (docs.trychroma.com)
OpenAI text-embedding-ada-002 (or local ONNX embedder)
SQLite documentation (sqlite.org)
DuckDB (ChromaDB's internal query engine)
MCP Protocol (modelcontextprotocol.io)
Shokunin Memory System Architecture (ARCHITECTURE.md)

Files

Just SKILL.md in .pack/skills/chromadb of EliasOulkadi/shokunin.

Open the folder on GitHubat commit 4c68e5b

Compare with similar skills

Chromadb next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.

Chromadb compared with similar skills
Skill	Stars	Used in	Tokens	Auto-check	Licence	Repo updated
Chromadb this skillEliasOulkadi/shokunin	114	—	~2.2k	Automated safety check: Pass	MIT	6 days ago
Agent Memory Systemsomer-metin/skills-for-antigravity	163	—	~731	Automated safety check: Pass	Apache-2.0	8 mo ago
Memoryharperreed/dotfiles	334	—	~484	Automated safety check: Pass	None	8 days ago
Codebase Managementgiancarloerra/SocratiCode	3.3k	1 repos	~1.8k	Automated safety check: Pass	AGPL-3.0	today
Codebase Explorationgiancarloerra/SocratiCode	3.3k	1 repos	~1.5k	Automated safety check: Pass	AGPL-3.0	today
Ogham Recallogham-mcp/ogham-mcp	115	—	~1k	Automated safety check: Pass	MIT	11 days ago

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Questions about Chromadb

What does Chromadb do?

Manage the ChromaDB vector database that stores the ecosystem's persistent memory. Chromadb is an agent skill from EliasOulkadi/shokunin. Manage the ChromaDB vector database that stores the ecosystem's persistent memory.

When should I use Chromadb?

Chromadb fits situations like: user asks to check memory storage; search stored entries; reset the vector database; general question answering about past sessions (use the memory skill for that).

How do I install Chromadb in Claude Code?

Run `npx skills add EliasOulkadi/shokunin --skill chromadb -a claude-code`. Or copy the skill folder (.pack/skills/chromadb in EliasOulkadi/shokunin) into .claude/skills/chromadb in your project. Claude Code loads it when a task matches its description.

How do I install Chromadb in Codex?

Run `npx skills add EliasOulkadi/shokunin --skill chromadb -a codex`. Or copy the skill folder (.pack/skills/chromadb in EliasOulkadi/shokunin) into .agents/skills/chromadb in your project. Codex loads it when a task matches its description.

Can I use Chromadb in Cursor, Gemini CLI or GitHub Copilot?

Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add EliasOulkadi/shokunin --skill chromadb -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/chromadb, .gemini/skills/chromadb, .github/skills/chromadb and .opencode/skills/chromadb in your project.

What does Chromadb need to run?

Going by SKILL.md and its folder, Chromadb needs the command-line tools its instructions call (python and pip). Our summary lists: Python 3. Compatibility (from SKILL.md): opencode.

Does Chromadb access the network?

SKILL.md contains no URLs. Its commands use pip, which can reach the network depending on how they are called. This is read from the text; nothing was executed.

Is Chromadb safe to install?

Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.

What licence does Chromadb use?

Chromadb is published under the MIT licence (declared in SKILL.md). It allows redistribution, so the full SKILL.md is shown on this page.

How many tokens does Chromadb use?

About 2.2k tokens (SKILL.md is roughly 8.9k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.

What are the alternatives to Chromadb?

Skills that share tags, products or a category with Chromadb: Agent Memory Systems (omer-metin/skills-for-antigravity, 163 stars), Memory (harperreed/dotfiles, 334 stars), Codebase Management (giancarloerra/SocratiCode, 3.3k stars) and Codebase Exploration (giancarloerra/SocratiCode, 3.3k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.

Who maintains Chromadb?

EliasOulkadi (a GitHub user) maintains it in EliasOulkadi/shokunin, which has 114 GitHub stars. The repository holds 49 skills in this directory. The repository was last updated on October 5, 2026.

Source: EliasOulkadi/shokunin on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.

Install Chromadb

Facts

At a glance

What it does

When your agent uses it

Example prompts

Requirements

Workflow steps

What it can do on your machine

Tool permissions

Runs code

Network

Credentials

Compatibility

Context cost

Safety

SKILL.md

chromadb · Memory Storage

Workflow

Step 1: Check storage status

Step 2: Search stored entries

Step 3: List recent entries

Step 4: Backup the database

Step 5: Delete entries by session prefix

Step 6: Full reset (requires confirmation)

Storage Details

Data Model

Session Management

Error Handling

Anti-Patterns

Automation

Recovery Procedures

Restore from backup

Rebuild from session logs

Verify database health

Checklist

Sources

Files

Compare with similar skills

Similar skills

More from EliasOulkadi/shokunin

Related

Questions about Chromadb