Executes all registered notebooks, strips noisy cell metadata, and syncs Jupytext pairs.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills execute --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .claude/skills/execute && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .claude/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/executeType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills execute --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .agents/skills/execute && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .agents/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills execute --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .cursor/skills/execute && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .cursor/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git --path skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills execute --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .gemini/skills/execute && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .gemini/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills executeInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .github/skills/execute && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .github/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install brycewang-stanford/Auto-Empirical-Research-Skills execute --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute .opencode/skills/execute && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "execute" agent skill from https://github.com/brycewang-stanford/Auto-Empirical-Research-Skills/tree/main/skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute into .opencode/skills/execute/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "execute", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
executeExecutes all registered notebooks, strips noisy cell metadata, and syncs Jupytext pairs.
Execute is an agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. Executes all registered notebooks, strips noisy cell metadata, and syncs Jupytext pairs. Use when asked to re-run notebooks or refresh outputs.
Its SKILL.md is about 370 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Data & Analytics. It works with Jupyter. The repository describes itself as: 🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库，覆盖8大社会科学学科的实证研究。CoPaper.AI…
5 steps, taken from the first numbered list in SKILL.md.
Read from SKILL.md and the folder at commit 9fa87d8. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
BashReadWriteEditGlobGrepFrom allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
uvjupyterFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md. Its commands use uv, which can reach the network depending on how they are called.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Execute loads about 370 tokens when it runs. Until then it costs about 38 tokens; SKILL.md has 148 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check noted patterns worth knowing about, such as sudo or a known installer.
allowed-tools: Bash, Read, Write, Edit, Glob, GrepAutomated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Its licence (Custom licence) doesn't allow us to republish the file, so here is its outline and opening line. It has 148 words (~370 tokens).
“Execute all registered notebooks, strip noisy metadata, and sync Jupytext pairs.”
Just SKILL.md in skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute of brycewang-stanford/Auto-Empirical-Research-Skills.
Open the folder on GitHubat commit 9fa87d8
Execute next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Execute this skillbrycewang-stanford/Auto-Empirical-Research-Skills | 4.5k | — | ~370 | Automated safety check: Notes | Custom licence | |
| Jupyter Notebookmicrosoft/ai-agents-for-beginners | 77k | 8 repos | ~1k | Automated safety check: Pass | Apache-2.0 | |
| Migrate Glue Devendpoint To Interactive Sessionsaws-samples/aws-glue-samples | 1.5k | — | ~3.6k | Automated safety check: Pass | MIT-0 | |
| Notebook For ExperimentJetBrains/intellij-community | 21k | — | ~4.4k | Automated safety check: Warn | Custom licence | |
| Jupyter To Marimoericmjl/llamabot | 182 | 2 repos | ~475 | Automated safety check: Pass | None | |
| Release Evidence WorkflowAli-Marandi/ClimateDataAnalyzer | 107 | — | ~1.6k | Automated safety check: Pass | MIT |
microsoft/ai-agents-for-beginners
A skill your agent uses when the user asks to create, scaffold, or edit Jupyter notebooks (.ipynb) for experiments, explorations, or tutorials; prefer the bundled templates and run the helper script…
aws-samples/aws-glue-samples
Migrate a legacy AWS Glue development endpoint to a Glue interactive session, following the official AWS migration checklist.
JetBrains/intellij-community
Create reproducible Jupyter notebooks for performance experiments.
ericmjl/llamabot
Convert a Jupyter notebook (.ipynb) to a marimo notebook (.py).
Ali-Marandi/ClimateDataAnalyzer
Build an auditable release-evidence workflow for a desktop or packaged application.
awdeorio/dotfiles
This skill should be used when the user asks to "review this notebook", "nbreview", "check my notebook", or otherwise requests a Jupyter notebook review.
brycewang-stanford/Auto-Empirical-Research-Skills
English LaTeX academic paper assistant for existing .tex projects.
brycewang-stanford/Auto-Empirical-Research-Skills
Opinionated Bayesian modeling workflow with PyMC and ArviZ. An agent skill from brycewang-stanford/Auto-Empirical-Research-Skills.
brycewang-stanford/Auto-Empirical-Research-Skills
Deeply analyze any empirical economics PDF using the five-question framework (五问框架): research question, identification strategy, core estimand, robustness logic, and scholarly contribution.
brycewang-stanford/Auto-Empirical-Research-Skills
A skill your agent uses when a research task needs reproducible Kaggle discovery, metadata inspection, bounded public-data downloads, competition or kernel discovery, model discovery, or an…
brycewang-stanford/Auto-Empirical-Research-Skills
Chinese LaTeX thesis assistant for existing .tex degree thesis projects (XeLaTeX/LuaLaTeX/latexmk).
brycewang-stanford/Auto-Empirical-Research-Skills
This skill should be used when the user asks to maintain an Obsidian knowledge base for a research project, import an existing research repository into Obsidian, keep project memory or daily notes…
Works with
Categories
Executes all registered notebooks, strips noisy cell metadata, and syncs Jupytext pairs. Execute is an agent skill from brycewang-stanford/Auto-Empirical-Research-Skills. Executes all registered notebooks, strips noisy cell metadata, and syncs Jupytext pairs.
Execute fits situations like: asked to re-run notebooks; refresh outputs.
Run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a claude-code`. Or copy the skill folder (skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute in brycewang-stanford/Auto-Empirical-Research-Skills) into .claude/skills/execute in your project. Claude Code loads it when a task matches its description.
Run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a codex`. Or copy the skill folder (skills/29-quarcs-lab-project20XXy/dot-claude/skills/execute in brycewang-stanford/Auto-Empirical-Research-Skills) into .agents/skills/execute in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add brycewang-stanford/Auto-Empirical-Research-Skills --skill execute -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/execute, .gemini/skills/execute, .github/skills/execute and .opencode/skills/execute in your project.
Going by SKILL.md and its folder, Execute needs the command-line tools its instructions call (uv and jupyter). Its frontmatter pre-approves these tools: Bash, Read, Write, Edit, Glob, Grep.
SKILL.md contains no URLs. Its commands use uv, which can reach the network depending on how they are called. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found notes only (pre-approves every shell command (allowed-tools: bash)), nothing it rates as a warning. It is not a guarantee. Review the folder before installing.
Execute has a licence file (the repository's licence) that doesn't match a standard licence. Read it on GitHub before reusing the skill.
About 370 tokens (SKILL.md is roughly 1.5k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Execute: Jupyter Notebook (microsoft/ai-agents-for-beginners, 77k stars), Migrate Glue Devendpoint To Interactive Sessions (aws-samples/aws-glue-samples, 1.5k stars), Notebook For Experiment (JetBrains/intellij-community, 21k stars) and Jupyter To Marimo (ericmjl/llamabot, 182 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
brycewang-stanford (a GitHub user) maintains it in brycewang-stanford/Auto-Empirical-Research-Skills, which has 4,529 GitHub stars. The repository holds 364 skills in this directory. The repository was last updated on October 5, 2026.
Source: brycewang-stanford/Auto-Empirical-Research-Skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.
