Nature Academic Search
wp-a/nature-academic-search
A skill your agent uses when users ask to 找文献、做文献检索、查论文、查临床试验、核验引用、去重文献、设计 PubMed/MeSH 检索式、追踪上下游引文、解析 DOI/PMID/PMCID/arXiv/OpenAlex/Semantic Scholar/NCT ID, 或导出 RIS、BibTeX、NBIB、ENW;also use for…
Implement mHC (Manifold-Constrained Hyper-Connections) for stabilizing deep network training.
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install benchflow-ai/skillsbench mhc-algorithm --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .claude/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .claude/skills/mhc-algorithm && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .claude/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithmType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install benchflow-ai/skillsbench mhc-algorithm --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .agents/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .agents/skills/mhc-algorithm && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .agents/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install benchflow-ai/skillsbench mhc-algorithm --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .cursor/skills/mhc-algorithm && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .cursor/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/benchflow-ai/skillsbench.git --path tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install benchflow-ai/skillsbench mhc-algorithm --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .gemini/skills/mhc-algorithm && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .gemini/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install benchflow-ai/skillsbench mhc-algorithmInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .github/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .github/skills/mhc-algorithm && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .github/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install benchflow-ai/skillsbench mhc-algorithm --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/benchflow-ai/skillsbench.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm .opencode/skills/mhc-algorithm && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "mhc-algorithm" agent skill from https://github.com/benchflow-ai/skillsbench/tree/main/tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm into .opencode/skills/mhc-algorithm/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "mhc-algorithm", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
mhc-algorithmImplement mHC (Manifold-Constrained Hyper-Connections) for stabilizing deep network training.
Mhc Algorithm is an agent skill from benchflow-ai/skillsbench. Implement mHC (Manifold-Constrained Hyper-Connections) for stabilizing deep network training. Use when implementing residual connection improvements with doubly stochastic matrices via Sinkhorn-Knopp algorithm. Based on DeepSeek's 2025 paper (arXiv:2512.24880).
Its SKILL.md is about 1k tokens, which your agent loads only when the skill is triggered. The skill folder holds 6 other files, including reference files (for example `references/core-concepts.md`, `references/gpt-integration.md` and `references/module-implementation.md`).
It sits in Research & Science, covering Academic paper search. It works with DeepSeek and arXiv. The repository describes itself as: SkillsBench evaluates how well skills work and how effective agents are at using them. The licence is Apache-2.0.
Read from SKILL.md and the folder at commit 9a1f4dd. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
No scripts in the folder and no shell commands in SKILL.md (its code samples are python).
From the folder's file list and the shell code blocks in SKILL.md.
Links to these hosts (documentation or services it may open):
arxiv.orgen.wikipedia.orgFrom URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Mhc Algorithm loads about 1k tokens when it runs, and up to ~4.5k if it reads all its reference files. Until then it costs about 69 tokens; SKILL.md has 166 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from benchflow-ai/skillsbench at commit 9a1f4dd, republished under its Apache-2.0 licence (© benchflow-ai). 166 words, ~1,029 tokens.
.claude/skills/mhc-algorithm/SKILL.md (or your agent's skills folder). This skill also uses 5 other files; get the full folder from GitHub.mHC (Manifold-Constrained Hyper-Connections) stabilizes deep network training by constraining residual mixing matrices to be doubly stochastic. It provides:
Two components:
| Topic | Reference |
|---|---|
| Core Concepts & Math | Core Concepts |
| Sinkhorn Algorithm | Sinkhorn-Knopp |
| HyperConnections Module | Module Implementation |
| GPT Integration | GPT Integration |
| Common Pitfalls | Pitfalls |
# Required packages
pip install torch einops numpyimport torch
import torch.nn as nn
from einops import rearrange, einsum
def sinkhorn_knopp(logits, num_iters=20, tau=0.05):
log_alpha = logits / tau
for _ in range(num_iters):
log_alpha = log_alpha - torch.logsumexp(log_alpha, dim=-1, keepdim=True)
log_alpha = log_alpha - torch.logsumexp(log_alpha, dim=-2, keepdim=True)
return torch.exp(log_alpha)
class HyperConnections(nn.Module):
def __init__(self, num_streams, dim, branch=None, layer_idx=0):
super().__init__()
self.num_streams = num_streams
self.branch = branch
# Initialize H_res near identity (use small negative for gradient flow)
init_h_res = torch.full((num_streams, num_streams), -0.1)
init_h_res.fill_diagonal_(0.0)
self.H_res_logits = nn.Parameter(init_h_res)
# H_pre/H_post for depth connections
init_h_pre = torch.full((1, num_streams), -0.1)
init_h_pre[0, layer_idx % num_streams] = 0.0
self.H_pre_logits = nn.Parameter(init_h_pre)
self.H_post_logits = nn.Parameter(torch.zeros(1, num_streams))
def forward(self, x):
s = self.num_streams
x = rearrange(x, "(b s) t d -> b t s d", s=s)
h_res = sinkhorn_knopp(self.H_res_logits)
x_mixed = einsum(h_res, x, "s t, b n s d -> b n t d")
h_pre = self.H_pre_logits.softmax(dim=-1)
branch_in = einsum(h_pre, x, "v s, b n s d -> b n v d").squeeze(-2)
branch_out = self.branch(branch_in) if self.branch else branch_in
h_post = self.H_post_logits.softmax(dim=-1)
depth_out = einsum(branch_out, h_post, "b t d, v s -> b t s d")
output = x_mixed + depth_out
return rearrange(output, "b t s d -> (b s) t d")import torch
import torch.nn as nn
import torch.nn.functional as F
from einops import rearrange, einsum, repeat, reduce| Scenario | Approach |
|---|---|
| Standard residual connection | No mHC needed |
| Deep networks (>12 layers) with stability issues | Use mHC with num_streams=4 |
| GPT/Transformer training | Wrap both attention and MLP with HyperConnections |
| Custom Sinkhorn iterations | Adjust num_iters (20 default) and tau (0.05 default) |
| Memory-constrained training | Reduce num_streams or batch size |
© benchflow-ai, Apache-2.0. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
SKILL.md and 5 other files (references) in tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm of benchflow-ai/skillsbench.
Open the folder on GitHubat commit 9a1f4dd
Mhc Algorithm next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Mhc Algorithm this skillbenchflow-ai/skillsbench | 1.8k | — | ~1k | Automated safety check: Pass | Apache-2.0 | |
| Nature Academic Searchwp-a/nature-academic-search | 299 | — | ~1.4k | Automated safety check: Pass | MIT | |
| Summaryalaliqing/claude-paper | 344 | 1 repos | ~2k | Automated safety check: Notes | MIT | |
| Read arXiv Paperkarpathy/nanochat | 58k | 2 repos | ~494 | Automated safety check: Pass | MIT | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 21 repos | ~5.9k | Automated safety check: Notes | MIT | |
| Citation ManagementK-Dense-AI/claude-scientific-writer | 2.4k | 3 repos | ~3.9k | Automated safety check: Notes | MIT |
wp-a/nature-academic-search
A skill your agent uses when users ask to 找文献、做文献检索、查论文、查临床试验、核验引用、去重文献、设计 PubMed/MeSH 检索式、追踪上下游引文、解析 DOI/PMID/PMCID/arXiv/OpenAlex/Semantic Scholar/NCT ID, 或导出 RIS、BibTeX、NBIB、ENW;also use for…
alaliqing/claude-paper
Use this for a quick summary of a research paper's core ideas and key points.
karpathy/nanochat
Fetches the TeX source of an arXiv paper from its URL, reads it and writes a markdown summary tied to the nanochat project.
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
K-Dense-AI/claude-scientific-writer
Finds papers in OpenAlex, PubMed and Google Scholar, turns DOIs, PMIDs and arXiv IDs into clean BibTeX, and validates citations for a manuscript or thesis.
neflibata-feng/MyArxiv-Agent
Query and analyze scholarly literature using the OpenAlex database.
benchflow-ai/skillsbench
This skill should be used when working on Lean 4 formalization projects to maintain persistent memory of successful proof patterns, failed approaches, project conventions, and user preferences…
benchflow-ai/skillsbench
World-class data engineering skill for building scalable data pipelines, ETL/ELT systems, real-time streaming, and data infrastructure.
benchflow-ai/skillsbench
AC branch pi-model power flow equations (P/Q and |S|) with transformer tap ratio and phase shift, matching acopf-math-model.md and MATPOWER branch fields.
benchflow-ai/skillsbench
Civilization 6 district mechanics library. An agent skill from benchflow-ai/skillsbench.
benchflow-ai/skillsbench
Build deterministic, verifiable data visualizations with D3.js (v6).
benchflow-ai/skillsbench
DC power flow analysis for power systems. An agent skill from benchflow-ai/skillsbench.
Categories
Implement mHC (Manifold-Constrained Hyper-Connections) for stabilizing deep network training. Mhc Algorithm is an agent skill from benchflow-ai/skillsbench. Implement mHC (Manifold-Constrained Hyper-Connections) for stabilizing deep network training.
Mhc Algorithm fits situations like: implementing residual connection improvements with doubly stochastic matrices via Sinkhorn-Knopp algorithm; tasks that involve Academic paper search.
Run `npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a claude-code`. Or copy the skill folder (tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm in benchflow-ai/skillsbench) into .claude/skills/mhc-algorithm in your project. Claude Code loads it when a task matches its description.
Run `npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a codex`. Or copy the skill folder (tasks-extra/mhc-layer-impl/environment/skills/mhc-algorithm in benchflow-ai/skillsbench) into .agents/skills/mhc-algorithm in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add benchflow-ai/skillsbench --skill mhc-algorithm -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/mhc-algorithm, .gemini/skills/mhc-algorithm, .github/skills/mhc-algorithm and .opencode/skills/mhc-algorithm in your project.
SKILL.md names no scripts, command-line tools or credentials: Mhc Algorithm is instructions for the agent only. Our summary lists: Python 3.
SKILL.md names 2 domains. As links in the text: arxiv.org and en.wikipedia.org. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Mhc Algorithm is published under the Apache-2.0 licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1k tokens (SKILL.md is roughly 4.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full. Its references folder adds about 3.5k tokens, read only when the agent opens those files.
Skills that share tags, products or a category with Mhc Algorithm: Nature Academic Search (wp-a/nature-academic-search, 299 stars), Summary (alaliqing/claude-paper, 344 stars), Read arXiv Paper (karpathy/nanochat, 58k stars) and Literature Review (neflibata-feng/MyArxiv-Agent, 126 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
benchflow-ai (a GitHub organization) maintains it in benchflow-ai/skillsbench, which has 1,832 GitHub stars. The repository holds 178 skills in this directory. The repository was last updated on July 23, 2026.
Source: benchflow-ai/skillsbench on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.