Codebase Management
giancarloerra/SocratiCode
Set up, index, and manage SocratiCode codebase indexing. An agent skill from giancarloerra/SocratiCode.
Autonomously improve a generated paper via GPT-5.4 xhigh review → implement fixes → recompile, for 2 rounds.
The automated check flagged lines worth reading first. See the safety section below.
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loop --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/auto-paper-improvement-loop .claude/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .claude/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loopType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loop --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/auto-paper-improvement-loop .agents/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .agents/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loop --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/auto-paper-improvement-loop .cursor/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .cursor/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/AI4Scientist/nano-scientist.git --path skills/auto-paper-improvement-loop--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loop --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/auto-paper-improvement-loop .gemini/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .gemini/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loopInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/auto-paper-improvement-loop .github/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .github/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install AI4Scientist/nano-scientist auto-paper-improvement-loop --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/AI4Scientist/nano-scientist.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/auto-paper-improvement-loop .opencode/skills/auto-paper-improvement-loop && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "auto-paper-improvement-loop" agent skill from https://github.com/AI4Scientist/nano-scientist/tree/main/skills/auto-paper-improvement-loop into .opencode/skills/auto-paper-improvement-loop/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "auto-paper-improvement-loop", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
auto-paper-improvement-loopAutonomously improve a generated paper via GPT-5.4 xhigh review → implement fixes → recompile, for 2 rounds.
Auto Paper Improvement Loop is an agent skill from AI4Scientist/nano-scientist. Autonomously improve a generated paper via GPT-5.4 xhigh review → implement fixes → recompile, for 2 rounds. Use when user says "改论文", "improve paper", "论文润色循环", "auto improve", or wants to iteratively polish a generated paper.
Its SKILL.md is about 8.8k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It works with OpenAI and Model Context Protocol. The repository describes itself as: An autonomous research agent that turns a topic into a peer-reviewed technical report.
12 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 7132192. It shows what the files ask for, not the result of running them.
Pre-approves these tools, so the agent can use them without asking each time:
Bash(*)ReadWriteEditGrepGlobAgentmcp__codex__codexmcp__codex__codex-replyFrom allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
python3jqFrom the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Auto Paper Improvement Loop loads about 8.8k tokens when it runs. Until then it costs about 64 tokens; SKILL.md has 3,177 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found patterns that need a careful read before installing.
t << 'EOF' > file`) to write in chunks. Do NOT ask the user for permission — just do it silently.allowed-tools: Bash(*), Read, Write, Edit, Grep, Glob, Agent, mcp__codex__codex, mcp__codex__codex-replyAutomated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
Without a licence we can't republish the file, so here is its outline and opening line. It has 3,177 words (~8,829 tokens).
“Autonomously improve the paper at: $ARGUMENTS”
Just SKILL.md in skills/auto-paper-improvement-loop of AI4Scientist/nano-scientist.
Open the folder on GitHubat commit 7132192
We found 8 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 4 other GitHub owners. This page covers the copy in AI4Scientist/nano-scientist, which our catalogue first saw on October 7, 2026.
Auto Paper Improvement Loop next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Auto Paper Improvement Loop this skillAI4Scientist/nano-scientist | 128 | 4 repos | ~8.8k | Automated safety check: Warn | None | |
| Codebase Managementgiancarloerra/SocratiCode | 3.3k | 1 repos | ~1.8k | Automated safety check: Pass | AGPL-3.0 | |
| Codex with ChatGPT Planning LoopXiaoDuoYa/codex-with-chatgpt | 7.1k | — | ~11k | Automated safety check: Notes | MIT | |
| Agent Squad Python Guide2FastLabs/agent-squad | 7.8k | — | ~4.7k | Automated safety check: Pass | Apache-2.0 | |
| Codebase Explorationgiancarloerra/SocratiCode | 3.3k | 1 repos | ~1.5k | Automated safety check: Pass | AGPL-3.0 | |
| Annotate Paper54yyyu/zotero-mcp | 5.3k | — | ~1.5k | Automated safety check: Pass | MIT |
giancarloerra/SocratiCode
Set up, index, and manage SocratiCode codebase indexing. An agent skill from giancarloerra/SocratiCode.
XiaoDuoYa/codex-with-chatgpt
Uses ChatGPT in the browser as the planning and review brain for a Codex session, with Codex keeping all execution and ChatGPT reading the workspace through a bridge.
2FastLabs/agent-squad
Map of the agent-squad Python framework for async multi-agent orchestration: which agent, classifier, storage and tool provider to pick, and the pitfalls to avoid.
giancarloerra/SocratiCode
Explore and understand codebases using SocratiCode semantic search, dependency graphs, and context artifacts.
54yyyu/zotero-mcp
Read the open paper and write study annotations into its PDF with zotero-cli - a context box on the title, a four-part summary on the abstract, role-coded abstract highlights, one box per figure…
DenisSergeevitch/agents-best-practices
A skill your agent uses when designing, generating an MVP blueprint for, auditing, troubleshooting, refactoring, or explaining an agentic harness for any domain.
AI4Scientist/nano-scientist
Structures and derives research formulas when the user wants to 推导公式, build a theory line, organize assumptions, turn scattered equations into a coherent derivation, or rewrite theory notes into a…
AI4Scientist/nano-scientist
Compile LaTeX paper to PDF, fix errors, and verify output. An agent skill from AI4Scientist/nano-scientist.
AI4Scientist/nano-scientist
Generate publication-quality figures and tables from experiment results.
AI4Scientist/nano-scientist
Find and read academic papers: disambiguate queries, discover papers (search, citation traversal, recommendations, arXiv monitoring, trending, GitHub search), evaluate (TLDR, citations, code, SOTA)…
AI4Scientist/nano-scientist
Writes rigorous mathematical proofs for ML/AI theory. An agent skill from AI4Scientist/nano-scientist.
AI4Scientist/nano-scientist
A skill your agent uses when main results pass result-to-claim (claimsupported=yes or partial) and ablation studies are needed for paper submission.
Works with
Autonomously improve a generated paper via GPT-5.4 xhigh review → implement fixes → recompile, for 2 rounds. Auto Paper Improvement Loop is an agent skill from AI4Scientist/nano-scientist.4 xhigh review → implement fixes → recompile, for 2 rounds.
Auto Paper Improvement Loop fits situations like: wants to iteratively polish a generated paper.
Run `npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a claude-code`. Or copy the skill folder (skills/auto-paper-improvement-loop in AI4Scientist/nano-scientist) into .claude/skills/auto-paper-improvement-loop in your project. Claude Code loads it when a task matches its description.
Run `npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a codex`. Or copy the skill folder (skills/auto-paper-improvement-loop in AI4Scientist/nano-scientist) into .agents/skills/auto-paper-improvement-loop in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add AI4Scientist/nano-scientist --skill auto-paper-improvement-loop -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/auto-paper-improvement-loop, .gemini/skills/auto-paper-improvement-loop, .github/skills/auto-paper-improvement-loop and .opencode/skills/auto-paper-improvement-loop in your project.
Going by SKILL.md and its folder, Auto Paper Improvement Loop needs the command-line tools its instructions call (python3 and jq). Our summary lists: Python 3. Its frontmatter pre-approves these tools: Bash(*), Read, Write, Edit, Grep, Glob, Agent, mcp__codex__codex, mcp__codex__codex-reply.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md flagged 1 warning(s): tells the agent its actions are pre-authorized / not to stop for confirmation. Read the flagged lines before installing; the check is not a guarantee either way.
No licence was found for Auto Paper Improvement Loop or its repository. Without one, default copyright applies: ask the author before reusing or redistributing it.
About 8.8k tokens (SKILL.md is roughly 35k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Auto Paper Improvement Loop: Codebase Management (giancarloerra/SocratiCode, 3.3k stars), Codex with ChatGPT Planning Loop (XiaoDuoYa/codex-with-chatgpt, 7.1k stars), Agent Squad Python Guide (2FastLabs/agent-squad, 7.8k stars) and Codebase Exploration (giancarloerra/SocratiCode, 3.3k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
AI4Scientist (a GitHub organization) maintains it in AI4Scientist/nano-scientist, which has 128 GitHub stars. The repository holds 74 skills in this directory. The repository was last updated on June 3, 2026.
Source: AI4Scientist/nano-scientist on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.