GitHub Deep Research
bytedance/deer-flow
Researches a GitHub repository over four rounds using the GitHub API and web search, then writes a structured markdown report with timeline, metrics and Mermaid diagrams.
A skill your agent uses when the user has a vague research direction and wants to explore feasible specific topics.
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install ai4s-research/ai4s-skills research-explorer --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .claude/skills && cp -r skills-src/skills/research-explorer .claude/skills/research-explorer && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .claude/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorerType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install ai4s-research/ai4s-skills research-explorer --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .agents/skills && cp -r skills-src/skills/research-explorer .agents/skills/research-explorer && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .agents/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install ai4s-research/ai4s-skills research-explorer --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/skills/research-explorer .cursor/skills/research-explorer && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .cursor/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/ai4s-research/ai4s-skills.git --path skills/research-explorer--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install ai4s-research/ai4s-skills research-explorer --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/skills/research-explorer .gemini/skills/research-explorer && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .gemini/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install ai4s-research/ai4s-skills research-explorerInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .github/skills && cp -r skills-src/skills/research-explorer .github/skills/research-explorer && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .github/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add ai4s-research/ai4s-skills --skill research-explorer -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install ai4s-research/ai4s-skills research-explorer --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/ai4s-research/ai4s-skills.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/skills/research-explorer .opencode/skills/research-explorer && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "research-explorer" agent skill from https://github.com/ai4s-research/ai4s-skills/tree/main/skills/research-explorer into .opencode/skills/research-explorer/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "research-explorer", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
research-explorerA skill your agent uses when the user has a vague research direction and wants to explore feasible specific topics.
Research Explorer is an agent skill from ai4s-research/ai4s-skills. Use when the user has a vague research direction and wants to explore feasible specific topics. Outputs a structured analysis with candidate topics, innovation/feasibility scoring, and a pre-survey of 20–30 representative works. Single-stage, no Python runtime.
Its SKILL.md is about 1.3k tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science. It works with Python. The repository describes itself as: Open-source agent skills for AI for Science: topic exploration, literature survey, experiments, paper writing, and integrity audit — driven by any coding agent. The licence is MIT.
5 steps, taken from the step headings in SKILL.md.
Read from SKILL.md and the folder at commit 744ab20. It shows what the files ask for, not the result of running them.
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Shell commands in SKILL.md call:
python3From the folder's file list and the shell code blocks in SKILL.md.
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Research Explorer loads about 1.3k tokens when it runs. Until then it costs about 70 tokens; SKILL.md has 553 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
The full file from ai4s-research/ai4s-skills at commit 744ab20, republished under its MIT licence (© ai4s-research). 553 words, ~1,284 tokens.
.claude/skills/research-explorer/SKILL.md (or your agent's skills folder).Research-topic exploration SKILL. Takes a broad direction, performs multi-dimensional web research with the agent's own WebSearch / WebFetch tools, and produces three structured Markdown deliverables. Single stage, full quality from the start. No Python runtime, no LLM SDK.
literature-survey or paper-writer.Confirm with the user:
DIRECTION="<direction>"
SLUG=$(python3 -c "import re,hashlib,sys; t=sys.argv[1]; n=re.sub(r'[\\s_]+','-',re.sub(r'[^\\w\\s-]','',t.lower().strip())).strip('-')[:40].rstrip('-'); h=hashlib.sha1(t.encode()).hexdigest()[:8]; print(f'{n}-{h}')" "$DIRECTION")
TS=$(date +%Y-%m-%d_%H%M%S)
RUN=output/research-explorer/$SLUG/$TS
mkdir -p "$RUN"
ln -sfn "$TS" "output/research-explorer/$SLUG/latest"In commands below $RUN = output/research-explorer/<slug>/latest.
Run WebSearch across the following dimensions (one query per dimension, more if returns are thin):
<direction> 2024 2025 hot topics" / "recent advances".<direction> open problems" / "challenges".<direction> survey 2024" / "<direction> review".<direction> benchmark" / "<direction> evaluation dataset".<direction> applications" / "<direction> industry use cases".<direction> + <adjacent field>" (pick 1–2 adjacent fields).For each kept candidate, WebFetch the abstract URL to extract canonical title / authors / year / venue. Persist intermediate notes to $RUN/search_notes.md after every dimension so the work resumes cleanly.
Write these in $RUN/:
research_exploration.mdStructured analysis containing:
topic_matrix.mdA hierarchical Markdown outline of the topic space:
# <Direction>
## Subfield A
### Topic A.1
### Topic A.2
## Subfield B
### Topic B.1This file is consumable by the mindmap-render skill to produce a visual mindmap.
literature_pre_survey.mdA pre-survey table of 20–30 representative works discovered above, with columns: title, authors, year, venue, URL, one-sentence relevance note. Every entry must have a URL the agent fetched in this session.
If the user picks a topic, suggest the next skill:
paper-writer skill (using the chosen topic).literature-survey skill.experiment-suite skill.mindmap-render skill consuming topic_matrix.md.A downstream skill can locate this exploration via the slug:
output/research-explorer/<slug>/latest/topic_matrix.mdoutput/research-explorer/<slug>/latest/literature_pre_survey.mdIf the user picks one topic from the matrix, downstream skills compute their own slug from the topic (not the original direction), so the slug paths diverge from this skill onward — which is correct.
SKILL.md.© ai4s-research, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Just SKILL.md in skills/research-explorer of ai4s-research/ai4s-skills.
Open the folder on GitHubat commit 744ab20
We found 2 copies of this SKILL.md (exact, near-identical or edited) in other folders, from 2 other GitHub owners. This page covers the copy in ai4s-research/ai4s-skills, which our catalogue first saw on October 7, 2026.
Research Explorer next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Research Explorer this skillai4s-research/ai4s-skills | 237 | 2 repos | ~1.3k | Automated safety check: Pass | MIT | |
| GitHub Deep Researchbytedance/deer-flow | 84k | 4 repos | ~1.3k | Automated safety check: Pass | MIT | |
| Last30daysmvanhorn/last30days-skill | 64k | — | ~7.9k | Automated safety check: Notes | MIT | |
| NetworkxzLanqing/codex-claude-academic-skills | 4.7k | 15 repos | ~3.2k | Automated safety check: Pass | BSD-3-Clause | |
| Nature-Style Scientific FiguresYuan1z0825/nature-skills | 47k | — | ~2.9k | Automated safety check: Pass | Apache-2.0 | |
| Citation ManagementK-Dense-AI/claude-scientific-writer | 2.4k | 2 repos | ~3.9k | Automated safety check: Notes | MIT |
bytedance/deer-flow
Researches a GitHub repository over four rounds using the GitHub API and web search, then writes a structured markdown report with timeline, metrics and Mermaid diagrams.
mvanhorn/last30days-skill
Research what people actually say about any topic in the last 30 days.
zLanqing/codex-claude-academic-skills
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python.
Yuan1z0825/nature-skills
Creates, revises, audits and exports manuscript-ready scientific figures in Python or R, and routes AI-generated graphical abstracts to a separate workflow.
K-Dense-AI/claude-scientific-writer
Finds papers in OpenAlex, PubMed and Google Scholar, turns DOIs, PMIDs and arXiv IDs into clean BibTeX, and validates citations for a manuscript or thesis.
LigphiDonk/Oh-my--paper
Searches bioRxiv life sciences preprints by keyword, author, date range or category with a Python script, returning JSON metadata and optional PDF downloads.
ai4s-research/ai4s-skills
A skill your agent uses when the user has a research question and needs a complete experiment package — design document, runnable code, results (measured or simulated with honest provenance)…
ai4s-research/ai4s-skills
A skill your agent uses when the user wants a comprehensive literature survey on a specific research topic.
ai4s-research/ai4s-skills
A skill your agent uses when the user wants a paper audited for integrity issues — image misuse, numerical anomalies, logical gaps — and needs a reviewable evidence report.
ai4s-research/ai4s-skills
A skill your agent uses when the user wants a complete, publication-grade research paper on a specific topic — produces 200+ real citations, 4–8 publication-grade figures, and 7 sections of…
ai4s-research/ai4s-skills
A skill your agent uses when the user wants an end-to-end AI4S research pipeline — broad direction or specific topic in, full research package out (exploration + literature survey + experiment +…
ai4s-research/ai4s-skills
Generate beautiful, high-resolution mindmaps from Markdown unordered lists.
Works with
Categories
A skill your agent uses when the user has a vague research direction and wants to explore feasible specific topics. Research Explorer is an agent skill from ai4s-research/ai4s-skills. Use when the user has a vague research direction and wants to explore feasible specific topics.
Research Explorer fits situations like: the user has a vague research direction and wants to explore feasible specific topics.
Run `npx skills add ai4s-research/ai4s-skills --skill research-explorer -a claude-code`. Or copy the skill folder (skills/research-explorer in ai4s-research/ai4s-skills) into .claude/skills/research-explorer in your project. Claude Code loads it when a task matches its description.
Run `npx skills add ai4s-research/ai4s-skills --skill research-explorer -a codex`. Or copy the skill folder (skills/research-explorer in ai4s-research/ai4s-skills) into .agents/skills/research-explorer in your project. Codex loads it when a task matches its description.
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add ai4s-research/ai4s-skills --skill research-explorer -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/research-explorer, .gemini/skills/research-explorer, .github/skills/research-explorer and .opencode/skills/research-explorer in your project.
Going by SKILL.md and its folder, Research Explorer needs the command-line tools its instructions call (python3). Our summary lists: Python 3.
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
Research Explorer is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
About 1.3k tokens (SKILL.md is roughly 5.1k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
Skills that share tags, products or a category with Research Explorer: GitHub Deep Research (bytedance/deer-flow, 84k stars), Last30days (mvanhorn/last30days-skill, 64k stars), Networkx (zLanqing/codex-claude-academic-skills, 4.7k stars) and Nature-Style Scientific Figures (Yuan1z0825/nature-skills, 47k stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
ai4s-research (a GitHub organization) maintains it in ai4s-research/ai4s-skills, which has 237 GitHub stars. The repository holds 7 skills in this directory. The repository was last updated on July 28, 2026.
Source: ai4s-research/ai4s-skills on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.