Literature Review
neflibata-feng/MyArxiv-Agent
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.).
学術、生物医学、技術、科学的なトピックに対するシステマティックな文献レビューワークフロー。検索計画、ソースのスクリーニング、統合、引用確認、証拠ログを含む。
Install Scientific Thinking Literature Review
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a claude-codeProject install by default; add -g for ~/.claude/skills/.
$ gh skill install affaan-m/ECC scientific-thinking-literature-review --agent claude-codeProject scope by default; add --scope user for a personal install. Needs GitHub CLI 2.90.0 or later (public preview).
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .claude/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .claude/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.claude/skills/ instead of .claude/skills for a personal install. The folder must contain SKILL.md.
Claude Code skills documentation · loads skills from .claude/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .claude/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.Claude Code copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$skill-installer install https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-reviewType this inside Codex. $skill-installer <name> installs a curated skill from openai/skills. The installer writes to $CODEX_HOME/skills (default ~/.codex/skills). Restart Codex if the skill does not show up.
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a codexProject install goes to .agents/skills/; add -g for ~/.codex/skills/.
$ gh skill install affaan-m/ECC scientific-thinking-literature-review --agent codexProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .agents/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .agents/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.agents/skills/ instead of .agents/skills for a personal install.
Codex skills documentation · loads skills from .agents/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .agents/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.Codex copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a cursorProject install goes to .agents/skills/; add -g for ~/.cursor/skills/.
$ gh skill install affaan-m/ECC scientific-thinking-literature-review --agent cursorProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .cursor/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .cursor/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.cursor/skills/ instead of .cursor/skills for a personal install.
Cursor skills documentation · loads skills from .cursor/skills/, .agents/skills/, .claude/skills/, .codex/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .cursor/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.Cursor copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gemini skills install https://github.com/affaan-m/ECC.git --path docs/ja-JP/skills/scientific-thinking-literature-review--scope user (default) or --scope workspace; --path is the subfolder of the repo that holds the skill; --consent skips the security confirmation prompt.
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a gemini-cliProject install goes to .agents/skills/; add -g for ~/.gemini/skills/.
$ gh skill install affaan-m/ECC scientific-thinking-literature-review --agent gemini-cliProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .gemini/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .gemini/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.gemini/skills/ instead of .gemini/skills for a personal install, then run /skills reload.
Gemini CLI skills documentation · loads skills from .gemini/skills/, .agents/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .gemini/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.Gemini CLI copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ gh skill install affaan-m/ECC scientific-thinking-literature-reviewInstalls for Copilot at project scope by default; add --scope user for a personal install. Preview a skill first with gh skill preview. Needs GitHub CLI 2.90.0 or later (public preview).
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a github-copilotProject install goes to .agents/skills/; add -g for ~/.copilot/skills/.
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .github/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .github/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.copilot/skills/ instead of .github/skills for a personal install. Commit .github/skills so cloud agent and code review can use it.
GitHub Copilot skills documentation · loads skills from .github/skills/, .claude/skills/, .agents/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .github/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.GitHub Copilot copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
$ npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a opencodeOpenCode documents no install command of its own. Project install goes to .agents/skills/; add -g for ~/.config/opencode/skills/.
$ gh skill install affaan-m/ECC scientific-thinking-literature-review --agent opencodeProject scope by default (.agents/skills/); add --scope user for a personal install.
$ git clone --depth 1 https://github.com/affaan-m/ECC.git skills-src && mkdir -p .opencode/skills && cp -r skills-src/docs/ja-JP/skills/scientific-thinking-literature-review .opencode/skills/scientific-thinking-literature-review && rm -rf skills-srcUse ~/.config/opencode/skills/ instead of .opencode/skills for a personal install.
OpenCode skills documentation · loads skills from .opencode/skills/, .claude/skills/, .agents/skills/
Install the "scientific-thinking-literature-review" agent skill from https://github.com/affaan-m/ECC/tree/main/docs/ja-JP/skills/scientific-thinking-literature-review into .opencode/skills/scientific-thinking-literature-review/ in this project. Copy the whole folder (SKILL.md and every file beside it), keep the folder name "scientific-thinking-literature-review", then confirm the skill loads.OpenCode copies the folder itself, the same result as the manual copy. Check what it changed before you commit it.
Facts
- Skill name
scientific-thinking-literature-review- GitHub stars
- 276k
- Token cost
- ~734 tokens
- SKILL.md length
- 135 words
- Files
- 1
- Skills in repo
- 683
- Repo updated
- First seen
- Licence
- MIT
At a glance
学術、生物医学、技術、科学的なトピックに対するシステマティックな文献レビューワークフロー。検索計画、ソースのスクリーニング、統合、引用確認、証拠ログを含む。
- Works in 8 steps: 質問の定義 → 検索計画 → 検索と証拠のログ → …
- Tasks that involve Literature review
- SKILL.md covers 使用するタイミング, レビューの種類, ワークフロー and 出力テンプレート, plus 1 more section
- Instructions only: no scripts, shell commands, URLs or credentials in SKILL.md
What it does
Scientific Thinking Literature Review is an agent skill from affaan-m/ECC. 学術、生物医学、技術、科学的なトピックに対するシステマティックな文献レビューワークフロー。検索計画、ソースのスクリーニング、統合、引用確認、証拠ログを含む。
Its SKILL.md is about 730 tokens, which your agent loads only when the skill is triggered. It is a single SKILL.md file with no bundled scripts.
It sits in Research & Science, covering Literature review. It works with arXiv. The repository describes itself as: The agent harness performance optimization system. Skills, instincts, memory, security, and research-first development for Claude Code, Codex, Opencode, Cursor and beyond. The licence is MIT.
When your agent uses it
- Tasks that involve Literature review
Example prompts
- “/scientific-thinking-literature-review”
Workflow steps
8 steps, taken from the step headings in SKILL.md.
What it can do on your machine
Read from SKILL.md and the folder at commit 4eb71d9. It shows what the files ask for, not the result of running them.
Tool permissions
Pre-approves nothing: there is no allowed-tools line, so your agent's usual permission prompts apply.
From allowed-tools in the SKILL.md frontmatter.
Runs code
No scripts in the folder and no shell commands in SKILL.md (its code samples are markdown).
From the folder's file list and the shell code blocks in SKILL.md.
Network
No URLs in SKILL.md.
From URLs in SKILL.md, links to its own repository left out.
Credentials
Names no API keys, tokens, secrets or passwords.
From names ending in _API_KEY, _TOKEN, _SECRET, _KEY or _PASSWORD in SKILL.md.
Context cost
Scientific Thinking Literature Review loads about 734 tokens when it runs. Until then it costs about 29 tokens; SKILL.md has 135 words of instructions outside code blocks.
Estimates: characters ÷ 4, the usual rule of thumb; real counts depend on the model's tokenizer. Scripts and assets cost tokens only if the agent reads them.
Safety
Auto-check passed
The automated check found no risky patterns in SKILL.md.
Automated static check — not a guarantee. Review scripts before installing. It scans the text of SKILL.md for risky patterns (piping downloads into a shell, reading credential files, hidden Unicode, destructive commands); files beside SKILL.md are not scanned.
SKILL.md
The full file from affaan-m/ECC at commit 4eb71d9, republished under its MIT licence (© affaan-m). 135 words, ~734 tokens.
Download SKILL.mdSave it as
.claude/skills/scientific-thinking-literature-review/SKILL.md (or your agent's skills folder).- name
- scientific-thinking-literature-review
- description
- 学術、生物医学、技術、科学的なトピックに対するシステマティックな文献レビューワークフロー。検索計画、ソースのスクリーニング、統合、引用確認、証拠ログを含む。
- origin
- community
Literature Review
学術的または技術的な文献の本体を検索、スクリーニング、統合、引用するタスクにこのスキルを使用します。
使用するタイミング
- システマティック、スコーピング、またはナラティブな文献レビューの構築。
- 研究質問に対する最先端の状態を統合する。
- ギャップ、矛盾、または今後の研究方向性を見つける。
- 論文やレポートの引用に裏付けられた背景セクションの準備。
- 査読済み論文、プレプリント、特許、技術レポートにわたる証拠の比較。
レビューの種類
- ナラティブレビュー: 広範な統合；方向性把握に有用。
- スコーピングレビュー: 概念、方法、証拠のギャップをマッピング。
- システマティックレビュー: 事前定義されたプロトコル、再現可能な検索、明示的なスクリーニングと除外。
- メタ分析: システマティックレビューに量的効果の集計を加えたもの。
どのレベルの厳密さが必要かをユーザーに確認してください。未指定の場合、探索的作業にはスコーピングレビュー、公開または臨床的主張にはシステマティックレビューをデフォルトとします。
ワークフロー
1. 質問の定義
プロンプトを検索可能な研究質問に変換します。
臨床または生物医学的作業には PICO を使用:
- 対象集団（Population）
- 介入または暴露（Intervention or exposure）
- 比較対象（Comparator）
- アウトカム（Outcome）
技術的な作業には以下を使用:
- システムまたはドメイン
- 方法または介入
- 比較ベースライン
- 評価メトリクス
2. 検索計画
ソースを収集する前に検索プロトコルを作成します:
- 検索するデータベース
- 日付範囲
- 言語
- 出版種別
- 包含基準
- 除外基準
- 正確な検索文字列
最低限必要なデータベースセット:
- 生物医学・生命科学文献には PubMed。
- CS、数学、物理、定量生物学、プレプリントには arXiv。
- 広範な学術発見には Semantic Scholar または Crossref。
- 臨床試験レジストリ、特許データベース、標準化機関、公式技術ドキュメントなど関連する場合はドメイン固有のソース。
3. 検索と証拠のログ
レビューを再現可能にする検索ログを記録します:
| データベース | 検索日 | クエリ | フィルター | 結果 | エクスポート |
| --- | --- | --- | --- | ---: | --- |
| PubMed | 2026-05-11 | `("CRISPR"[tiab] OR "Cas9"[tiab]) AND "sickle cell"[tiab]` | 2020:2026, English | 86 | PMID リスト |
| arXiv | 2026-05-11 | `CRISPR sickle cell gene editing` | q-bio, 2020:2026 | 9 | BibTeX |未加工の ID、URL、DOI、アブストラクト、注記を最終的な散文とは別に保存します。
4. 重複の排除
以下の順序で重複を排除します:
- DOI
- PMID または arXiv ID
- 正確なタイトル
- 正規化されたタイトルに加えて第一著者と年
削除された重複の数を記録します。
5. ソースのスクリーニング
段階的にスクリーニングします:
- タイトル
- アブストラクト
- 全文
システマティックな作業では、除外理由を記録します:
- 対象集団が異なる
- 介入が異なる
- アウトカムが異なる
- 一次研究でない
- 重複
- 全文が入手不可
- 日付範囲外
6. データの抽出
構造化された抽出テーブルを使用します:
| 研究 | デザイン | 集団/データ | 方法 | 比較対象 | アウトカム | 主要所見 | 限界 |
| --- | --- | --- | --- | --- | --- | --- | --- |
| 著者 年 | RCT/コホート/レビューなど | サンプルまたはコーパス | 方法 | ベースライン | 測定されたアウトカム | 結果 | 注意点 |技術論文には、データセット、ベンチマーク、メトリクス、ベースライン、再現性の注記を含めます。
7. 統合
論文を一つ一つ要約するのではなく、テーマ別に証拠をグループ化します。
有用な統合の視点:
- 最も強い証拠
- 相反する証拠
- 方法論上の弱点
- 集団またはデータセットの限界
- 最近性と再現性
- 実践的な示唆
- 未回答の質問
信頼度別に主張を区別します:
- 高い信頼度: 複数のソースにわたって再現された高品質な証拠。
- 中程度の信頼度: もっともらしいが、サンプル、方法、または最近性によって限定される。
- 低い信頼度: 初期段階、投機的、単一ソース、または弱い測定。
8. 引用の確認
最終化する前に:
- DOI、PMID、arXiv ID、または公式 URL を確認
- 著者名と出版年を確認
- 論文が述べていない主張のために論文を引用しない
- プレプリントはプレプリントとしてマーク
- レビューと一次証拠を区別する
出力テンプレート
# 文献レビュー: <トピック>
作成日: <日付>
レビューの種類: <ナラティブ | スコーピング | システマティック | メタ分析>
検索期間: <日付>
データベース: <リスト>
## 研究質問
## 検索戦略
## 包含・除外基準
## 証拠のサマリー
## テーマ別統合
## ギャップと限界
## 参考文献
## 検索ログ落とし穴
- 検索スニペットを証拠として扱わない。
- プレプリント、レビュー、一次研究にラベルを付けずに混在させない。
- 否定的または相反する所見を省略しない。
- 再現可能なプロトコルなしにシステマティックレビューの厳密さを主張しない。
- 範囲が明示的にそのデータベースに限定されている場合を除き、広範な主張に単一のデータベースを使用しない。
© affaan-m, MIT. Rendered from Markdown: HTML in the file is shown as text, images as links, and headings moved down two levels. Raw file
Files
Just SKILL.md in docs/ja-JP/skills/scientific-thinking-literature-review of affaan-m/ECC.
Open the folder on GitHubat commit 4eb71d9
Compare with similar skills
Scientific Thinking Literature Review next to the 5 skills that share the most tags, products or categories with it. Stars are the repository's; “used in” counts other GitHub owners with a copy.
| Skill | Stars | Used in | Tokens | Auto-check | Licence | Repo updated |
|---|---|---|---|---|---|---|
| Scientific Thinking Literature Review this skillaffaan-m/ECC | 276k | — | ~734 | Automated safety check: Pass | MIT | |
| Literature Reviewneflibata-feng/MyArxiv-Agent | 126 | 20 repos | ~5.9k | Automated safety check: Notes | MIT | |
| Systematic Literature Review Builderbytedance/deer-flow | 84k | 2 repos | ~4.3k | Automated safety check: Pass | MIT | |
| Paper Research on arXivXiaomiMiMo/MiMo-Code | 14k | — | ~1.5k | Automated safety check: Pass | MIT | |
| Literature Review AgentAr9av/PaperOrchestra | 679 | 1 repos | ~5.2k | Automated safety check: Pass | Custom licence | |
| Arxiv MCP Serverblazickjp/arxiv-mcp-server | 3.2k | — | ~353 | Automated safety check: Pass | Apache-2.0 |
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Categories
Questions about Scientific Thinking Literature Review
What does Scientific Thinking Literature Review do?
学術、生物医学、技術、科学的なトピックに対するシステマティックな文献レビューワークフロー。検索計画、ソースのスクリーニング、統合、引用確認、証拠ログを含む。. Scientific Thinking Literature Review is an agent skill from affaan-m/ECC.
When should I use Scientific Thinking Literature Review?
Scientific Thinking Literature Review fits situations like: tasks that involve Literature review.
How do I install Scientific Thinking Literature Review in Claude Code?
Run `npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a claude-code`. Or copy the skill folder (docs/ja-JP/skills/scientific-thinking-literature-review in affaan-m/ECC) into .claude/skills/scientific-thinking-literature-review in your project. Claude Code loads it when a task matches its description.
How do I install Scientific Thinking Literature Review in Codex?
Run `npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a codex`. Or copy the skill folder (docs/ja-JP/skills/scientific-thinking-literature-review in affaan-m/ECC) into .agents/skills/scientific-thinking-literature-review in your project. Codex loads it when a task matches its description.
Can I use Scientific Thinking Literature Review in Cursor, Gemini CLI or GitHub Copilot?
Cursor, Gemini CLI, GitHub Copilot and OpenCode also load SKILL.md folders. With the skills CLI, run `npx skills add affaan-m/ECC --skill scientific-thinking-literature-review -a cursor` (or -a gemini-cli, github-copilot or opencode for the others). To copy it by hand, put the folder in .cursor/skills/scientific-thinking-literature-review, .gemini/skills/scientific-thinking-literature-review, .github/skills/scientific-thinking-literature-review and .opencode/skills/scientific-thinking-literature-review in your project.
What does Scientific Thinking Literature Review need to run?
SKILL.md names no scripts, command-line tools or credentials: Scientific Thinking Literature Review is instructions for the agent only.
Does Scientific Thinking Literature Review access the network?
SKILL.md contains no URLs. Any network use would come from the scripts or tools the agent runs. This is read from the text; nothing was executed.
Is Scientific Thinking Literature Review safe to install?
Our automated static check of SKILL.md found no risky patterns, such as piping downloads into a shell, reading credential files or hidden Unicode. It is not a guarantee. Review the folder before installing.
What licence does Scientific Thinking Literature Review use?
Scientific Thinking Literature Review is published under the MIT licence (the repository's licence). It allows redistribution, so the full SKILL.md is shown on this page.
How many tokens does Scientific Thinking Literature Review use?
About 734 tokens (SKILL.md is roughly 2.9k characters). Agents keep only the skill's name and description in context until a task matches; then they load SKILL.md in full.
What are the alternatives to Scientific Thinking Literature Review?
Skills that share tags, products or a category with Scientific Thinking Literature Review: Literature Review (neflibata-feng/MyArxiv-Agent, 126 stars), Systematic Literature Review Builder (bytedance/deer-flow, 84k stars), Paper Research on arXiv (XiaomiMiMo/MiMo-Code, 14k stars) and Literature Review Agent (Ar9av/PaperOrchestra, 679 stars). The comparison table on this page puts their stars, adoption, token cost, safety result and licence side by side.
Who maintains Scientific Thinking Literature Review?
affaan-m (a GitHub user) maintains it in affaan-m/ECC, which has 276,111 GitHub stars. The repository holds 683 skills in this directory. The repository was last updated on October 10, 2026.
Source: affaan-m/ECC on GitHub. Facts on this page come from the repository at the commit we read; the author's words are quoted as theirs.