Ollama · For researchers

Quick reference for wdoc, a command-line and Python tool that summarizes, searches and answers questions over documents of many file types.

thiswillbeyourgithub/wdoc

Drives a self-hosted Open Notebook instance to organize sources into notebooks, chat with documents, generate notes and multi-speaker podcasts, and search across material.

agent-skills-hub/agent-skills-hub

Build and query a local vector database + GraphRAG over your entire reference library (Zotero or a PDF folder) for literature review.

joshzyj/open-scholar-skill

Builds and queries a local contextual BM25 index over an Obsidian vault, with optional Nomic reranking through Ollama and strict consent rules before any text leaves the machine.

AgriciDaniel/claude-obsidian

Rebuild the graphify knowledge graph (graphify-out/) by shelling out to issue-flow graphify or graphify directly.

jepegit/cellpy

Run bioinformatics analyses using Lobster AI - single-cell RNA-seq, bulk RNA-seq, literature mining, dataset discovery, quality control, and visualization.

FreedomIntelligence/OpenClaw-Medical-Skills

Search PubMed, preserve complete abstracts and sections, and produce research briefings with abstract openings or optional OpenAI/Ollama summaries.

ClawBio/ClawBio

Run the /build slash command: rebuild the graphify knowledge graph for the project (graphify-out/graph.html, GRAPHREPORT.md, graph.json) by shelling out to issue-flow build (or graphify directly).

jepegit/cellpy