Search
Biopython · Protein structure and design
Skills
Sort:BestMost starsTrending todayTrending this weekTrending this monthNewestRecently updatedName
| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Quick reference for Biopython work: sequence operations, SeqIO file parsing, BLAST searches, Entrez queries, phylogenetic trees and PDB structure analysis. | aiming-lab/ | 15k | — | ~810 | Automated safety check: Pass | MIT | 1 mo ago |
| 2 | 2.Gget CLI/Python toolkit for rapid bioinformatics queries. An agent skill from davila7/claude-code-templates. | davila7/ | 33k | 10 repos | ~6.3k | Automated safety check: Pass | MIT | today |
| 3 | Find cross-database references between NCBI databases using Biopython Bio.Entrez (ELink). | GPTomics/ | 1.2k | 2 repos | ~3.8k | Automated safety check: Pass | MIT | 1 mo ago |
| 4 | Perform geometric calculations on protein structures using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~3.2k | Automated safety check: Pass | No licence | 2 mo ago |
| 5 | Parse and write protein structure files using Biopython Bio.PDB. | FreedomIntelligence/ | 3.1k | 1 repo | ~1.9k | Automated safety check: Pass | No licence | 2 mo ago |
| 6 | Modify protein structures using Biopython Bio.PDB. An agent skill from FreedomIntelligence/OpenClaw-Medical-Skills. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.8k | Automated safety check: Pass | No licence | 2 mo ago |
| 7 | Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. | FreedomIntelligence/ | 3.1k | 1 repo | ~2.3k | Automated safety check: Pass | No licence | 2 mo ago |
| 8 | Measures geometric properties of protein structures with Biopython Bio.PDB - interatomic distances, distance matrices, bond and dihedral angles (phi/psi/chi, Ramachandran), superposition and RMSD… | GPTomics/ | 1.2k | 1 repo | ~4.9k | Automated safety check: Pass | MIT | 1 mo ago |
| 9 | Reads, writes, downloads, and converts macromolecular structures with Biopython Bio.PDB. | GPTomics/ | 1.2k | 1 repo | ~4k | Automated safety check: Pass | MIT | 1 mo ago |
| 10 | Modifies protein structures in place with Biopython Bio.PDB - transforms coordinates, strips waters/heteroatoms, overloads the B-factor column, renumbers, and builds entities. | GPTomics/ | 1.2k | 1 repo | ~4.4k | Automated safety check: Pass | MIT | 1 mo ago |
| 11 | Use Bio.PDB to parse and analyze protein structures (PDB/mmCIF) for structural bioinformatics tasks; use when you need structure parsing, geometry calculations, or structural comparison/superposition. | aipoch/ | 1.9k | — | ~2.1k | Automated safety check: Pass | MIT | 24 days ago |
