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AnnData · For developers
4 skills found.
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Skills
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| # | Skill | Repository | Stars | Used in | Tokens | Auto-check | Licence | Updated |
|---|---|---|---|---|---|---|---|---|
| 1 | Run AlphaGenome-PyTorch to get genomic track predictions — via the agt predict CLI (single locus, BED regions, whole chromosomes, raw FASTA sequences, or per-gene count tables/AnnData), variant… | genomicsxai/ | 162 | — | ~868 | Automated safety check: Pass | Apache-2.0 | 26 days ago |
| 2 | 2.Lamindb Manages biological datasets and models with LaminDB, including artifact registration, lineage tracking, schema validation, Bionty ontology annotation, query/search, collections, branches, storage… | K-Dense-AI/ | 48k | 1 repo | ~2.1k | Automated safety check: Pass | Apache-2.0 | 6 days ago |
| 3 | Load when building the neighbour graph, embedding (UMAP/t-SNE/diffmap/PHATE), and clustering (Leiden/Louvain) on a normalised single-cell AnnData. | TianGzlab/ | 161 | — | ~2.4k | Automated safety check: Pass | Apache-2.0 | 4 days ago |
| 4 | Load when removing batch effects from multi-batch spatial AnnData with PCA using Harmony, BBKNN, or Scanorama. | TianGzlab/ | 161 | — | ~1.3k | Automated safety check: Pass | Apache-2.0 | 4 days ago |
