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RDKit · By learningmatter-mit

4 skills found.
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1

Calculate homolytic and heterolytic bond dissociation energies (BDEs) for all single bonds in a molecule using MLIPs with RDKit fragmentation.

learningmatter-mit/AtomisticSkills176—~2.5kAutomated safety check: PassMITyesterday
2

Generate molecular conformers with RDKit ETKDG, relax with MLIPs, and rank by energy with Boltzmann weighting.

learningmatter-mit/AtomisticSkills176—~1.3kAutomated safety check: PassMITyesterday
3

Dock small-molecule guests into a porous host material using the VOID library (Voronoi Clustering), generating multiple 3D conformers with RDKit and ranking generated complexes.

learningmatter-mit/AtomisticSkills176—~918Automated safety check: PassMITyesterday
4

Compute RDKit physicochemical descriptors and rule-based drug-likeness heuristics (Ro5, Veber, QED) from SMILES.

learningmatter-mit/AtomisticSkills176—~1.1kAutomated safety check: PassMITyesterday